Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2377

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2376 and EX28DRAFT_2377 are separated by 108 nucleotidesEX28DRAFT_2377 and EX28DRAFT_2378 overlap by 4 nucleotidesEX28DRAFT_2378 and EX28DRAFT_2379 overlap by 4 nucleotides EX28DRAFT_2376: EX28DRAFT_2376 - Arabinose efflux permease, at 2,396,553 to 2,397,800 _2376 EX28DRAFT_2377: EX28DRAFT_2377 - ABC-type Fe3+-siderophore transport system, permease component, at 2,397,909 to 2,398,913 _2377 EX28DRAFT_2378: EX28DRAFT_2378 - ABC-type enterobactin transport system, permease component, at 2,398,910 to 2,399,902 _2378 EX28DRAFT_2379: EX28DRAFT_2379 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 2,399,899 to 2,400,699 _2379 Position (kb) 2397 2398 2399Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2396.930 kb on + strand, within EX28DRAFT_2376at 2396.931 kb on - strand, within EX28DRAFT_2376at 2397.171 kb on + strand, within EX28DRAFT_2376at 2397.461 kb on - strand, within EX28DRAFT_2376at 2397.558 kb on - strand, within EX28DRAFT_2376at 2397.817 kb on + strandat 2397.818 kb on - strandat 2397.865 kb on + strandat 2397.865 kb on + strandat 2397.866 kb on - strandat 2397.908 kb on + strandat 2397.908 kb on + strandat 2397.908 kb on + strandat 2397.908 kb on + strandat 2397.909 kb on - strandat 2398.345 kb on + strand, within EX28DRAFT_2377at 2398.346 kb on - strand, within EX28DRAFT_2377at 2398.346 kb on - strand, within EX28DRAFT_2377at 2398.437 kb on + strand, within EX28DRAFT_2377at 2398.648 kb on + strand, within EX28DRAFT_2377at 2398.885 kb on + strandat 2398.933 kb on - strandat 2399.088 kb on + strand, within EX28DRAFT_2378at 2399.392 kb on + strand, within EX28DRAFT_2378at 2399.549 kb on - strand, within EX28DRAFT_2378

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,396,930 + EX28DRAFT_2376 0.30 +0.3
2,396,931 - EX28DRAFT_2376 0.30 +0.1
2,397,171 + EX28DRAFT_2376 0.50 +0.3
2,397,461 - EX28DRAFT_2376 0.73 -0.9
2,397,558 - EX28DRAFT_2376 0.81 +0.9
2,397,817 + -1.5
2,397,818 - -0.4
2,397,865 + +0.1
2,397,865 + +0.3
2,397,866 - -0.1
2,397,908 + -0.7
2,397,908 + -0.1
2,397,908 + +0.0
2,397,908 + -0.8
2,397,909 - -0.3
2,398,345 + EX28DRAFT_2377 0.43 -0.8
2,398,346 - EX28DRAFT_2377 0.43 -1.4
2,398,346 - EX28DRAFT_2377 0.43 -0.5
2,398,437 + EX28DRAFT_2377 0.53 -0.2
2,398,648 + EX28DRAFT_2377 0.74 -0.1
2,398,885 + -1.2
2,398,933 - -3.9
2,399,088 + EX28DRAFT_2378 0.18 +0.8
2,399,392 + EX28DRAFT_2378 0.49 +1.1
2,399,549 - EX28DRAFT_2378 0.64 -0.7

Or see this region's nucleotide sequence