Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2272 and EX28DRAFT_2273 are separated by 99 nucleotides EX28DRAFT_2273 and EX28DRAFT_2274 are separated by 19 nucleotides EX28DRAFT_2274 and EX28DRAFT_2275 overlap by 14 nucleotides
EX28DRAFT_2272: EX28DRAFT_2272 - citrate synthase (EC 2.3.3.1), at 2,295,636 to 2,296,919
_2272
EX28DRAFT_2273: EX28DRAFT_2273 - Formamidopyrimidine-DNA glycosylase, at 2,297,019 to 2,297,810
_2273
EX28DRAFT_2274: EX28DRAFT_2274 - Uncharacterized proteins, homologs of lactam utilization protein B, at 2,297,830 to 2,298,570
_2274
EX28DRAFT_2275: EX28DRAFT_2275 - biotin-dependent carboxylase uncharacterized domain, at 2,298,557 to 2,299,489
_2275
Position (kb)
2297
2298 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2296.072 kb on - strand, within EX28DRAFT_2272 at 2296.095 kb on - strand, within EX28DRAFT_2272 at 2296.170 kb on + strand, within EX28DRAFT_2272 at 2296.170 kb on + strand, within EX28DRAFT_2272 at 2296.170 kb on + strand, within EX28DRAFT_2272 at 2296.171 kb on - strand, within EX28DRAFT_2272 at 2296.171 kb on - strand, within EX28DRAFT_2272 at 2296.194 kb on + strand, within EX28DRAFT_2272 at 2296.215 kb on + strand, within EX28DRAFT_2272 at 2296.216 kb on - strand, within EX28DRAFT_2272 at 2296.729 kb on - strand, within EX28DRAFT_2272 at 2296.872 kb on + strand at 2296.873 kb on - strand at 2296.873 kb on - strand at 2296.908 kb on - strand at 2296.908 kb on - strand at 2296.910 kb on + strand at 2297.020 kb on + strand at 2297.021 kb on - strand at 2297.066 kb on + strand at 2297.067 kb on - strand at 2297.127 kb on - strand, within EX28DRAFT_2273 at 2297.255 kb on + strand, within EX28DRAFT_2273 at 2297.255 kb on + strand, within EX28DRAFT_2273 at 2297.256 kb on - strand, within EX28DRAFT_2273 at 2297.302 kb on + strand, within EX28DRAFT_2273 at 2297.302 kb on + strand, within EX28DRAFT_2273 at 2297.306 kb on + strand, within EX28DRAFT_2273 at 2297.306 kb on + strand, within EX28DRAFT_2273 at 2297.500 kb on + strand, within EX28DRAFT_2273 at 2297.597 kb on - strand, within EX28DRAFT_2273 at 2297.612 kb on + strand, within EX28DRAFT_2273 at 2297.614 kb on + strand, within EX28DRAFT_2273 at 2297.614 kb on + strand, within EX28DRAFT_2273 at 2297.614 kb on + strand, within EX28DRAFT_2273 at 2297.615 kb on - strand, within EX28DRAFT_2273 at 2297.615 kb on - strand, within EX28DRAFT_2273 at 2297.616 kb on + strand, within EX28DRAFT_2273 at 2297.616 kb on + strand, within EX28DRAFT_2273 at 2297.617 kb on - strand, within EX28DRAFT_2273 at 2297.617 kb on - strand, within EX28DRAFT_2273 at 2297.667 kb on + strand, within EX28DRAFT_2273 at 2297.668 kb on - strand, within EX28DRAFT_2273 at 2297.668 kb on - strand, within EX28DRAFT_2273 at 2297.668 kb on - strand, within EX28DRAFT_2273 at 2297.712 kb on + strand, within EX28DRAFT_2273 at 2297.713 kb on - strand, within EX28DRAFT_2273 at 2297.918 kb on - strand, within EX28DRAFT_2274 at 2298.012 kb on + strand, within EX28DRAFT_2274 at 2298.158 kb on - strand, within EX28DRAFT_2274 at 2298.177 kb on + strand, within EX28DRAFT_2274 at 2298.432 kb on + strand, within EX28DRAFT_2274 at 2298.432 kb on + strand, within EX28DRAFT_2274 at 2298.433 kb on - strand, within EX28DRAFT_2274 at 2298.433 kb on - strand, within EX28DRAFT_2274 at 2298.690 kb on + strand, within EX28DRAFT_2275 at 2298.759 kb on - strand, within EX28DRAFT_2275 at 2298.759 kb on - strand, within EX28DRAFT_2275
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,296,072 - EX28DRAFT_2272 0.34 -4.0 2,296,095 - EX28DRAFT_2272 0.36 -1.1 2,296,170 + EX28DRAFT_2272 0.42 -1.5 2,296,170 + EX28DRAFT_2272 0.42 -3.7 2,296,170 + EX28DRAFT_2272 0.42 -2.2 2,296,171 - EX28DRAFT_2272 0.42 -0.8 2,296,171 - EX28DRAFT_2272 0.42 -1.1 2,296,194 + EX28DRAFT_2272 0.43 -3.0 2,296,215 + EX28DRAFT_2272 0.45 -0.8 2,296,216 - EX28DRAFT_2272 0.45 -1.9 2,296,729 - EX28DRAFT_2272 0.85 -1.8 2,296,872 + -2.5 2,296,873 - -0.9 2,296,873 - -1.4 2,296,908 - +0.8 2,296,908 - -2.0 2,296,910 + -0.5 2,297,020 + +0.1 2,297,021 - -0.9 2,297,066 + -0.8 2,297,067 - -0.6 2,297,127 - EX28DRAFT_2273 0.14 +0.9 2,297,255 + EX28DRAFT_2273 0.30 -0.5 2,297,255 + EX28DRAFT_2273 0.30 +0.3 2,297,256 - EX28DRAFT_2273 0.30 -0.4 2,297,302 + EX28DRAFT_2273 0.36 +0.2 2,297,302 + EX28DRAFT_2273 0.36 +1.3 2,297,306 + EX28DRAFT_2273 0.36 -1.0 2,297,306 + EX28DRAFT_2273 0.36 +0.4 2,297,500 + EX28DRAFT_2273 0.61 +1.9 2,297,597 - EX28DRAFT_2273 0.73 -0.5 2,297,612 + EX28DRAFT_2273 0.75 +0.7 2,297,614 + EX28DRAFT_2273 0.75 -1.1 2,297,614 + EX28DRAFT_2273 0.75 -0.3 2,297,614 + EX28DRAFT_2273 0.75 -0.6 2,297,615 - EX28DRAFT_2273 0.75 +0.7 2,297,615 - EX28DRAFT_2273 0.75 +0.6 2,297,616 + EX28DRAFT_2273 0.75 +0.8 2,297,616 + EX28DRAFT_2273 0.75 +0.7 2,297,617 - EX28DRAFT_2273 0.76 +0.0 2,297,617 - EX28DRAFT_2273 0.76 +0.1 2,297,667 + EX28DRAFT_2273 0.82 +0.4 2,297,668 - EX28DRAFT_2273 0.82 -0.3 2,297,668 - EX28DRAFT_2273 0.82 -2.8 2,297,668 - EX28DRAFT_2273 0.82 +0.0 2,297,712 + EX28DRAFT_2273 0.88 -1.0 2,297,713 - EX28DRAFT_2273 0.88 +0.0 2,297,918 - EX28DRAFT_2274 0.12 -0.3 2,298,012 + EX28DRAFT_2274 0.25 -0.0 2,298,158 - EX28DRAFT_2274 0.44 -0.4 2,298,177 + EX28DRAFT_2274 0.47 -0.2 2,298,432 + EX28DRAFT_2274 0.81 -1.2 2,298,432 + EX28DRAFT_2274 0.81 +2.0 2,298,433 - EX28DRAFT_2274 0.81 -0.5 2,298,433 - EX28DRAFT_2274 0.81 -0.4 2,298,690 + EX28DRAFT_2275 0.14 +0.4 2,298,759 - EX28DRAFT_2275 0.22 -0.1 2,298,759 - EX28DRAFT_2275 0.22 -0.0
Or see this region's nucleotide sequence