Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2182 and EX28DRAFT_2183 are separated by 45 nucleotides EX28DRAFT_2183 and EX28DRAFT_2184 are separated by 243 nucleotides EX28DRAFT_2184 and EX28DRAFT_2185 are separated by 122 nucleotides
EX28DRAFT_2182: EX28DRAFT_2182 - Small-conductance mechanosensitive channel, at 2,203,925 to 2,206,138
_2182
EX28DRAFT_2183: EX28DRAFT_2183 - Predicted SAM-dependent methyltransferase, at 2,206,184 to 2,207,095
_2183
EX28DRAFT_2184: EX28DRAFT_2184 - Protein of unknown function (DUF1471), at 2,207,339 to 2,207,605
_2184
EX28DRAFT_2185: EX28DRAFT_2185 - transcriptional regulator, TraR/DksA family, at 2,207,728 to 2,207,994
_2185
Position (kb)
2206
2207
2208 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2205.241 kb on + strand, within EX28DRAFT_2182 at 2205.242 kb on - strand, within EX28DRAFT_2182 at 2205.608 kb on - strand, within EX28DRAFT_2182 at 2205.611 kb on - strand, within EX28DRAFT_2182 at 2205.611 kb on - strand, within EX28DRAFT_2182 at 2205.625 kb on + strand, within EX28DRAFT_2182 at 2205.626 kb on - strand, within EX28DRAFT_2182 at 2205.816 kb on - strand, within EX28DRAFT_2182 at 2205.845 kb on - strand, within EX28DRAFT_2182 at 2205.845 kb on - strand, within EX28DRAFT_2182 at 2206.082 kb on + strand at 2206.090 kb on - strand at 2206.185 kb on + strand at 2206.185 kb on + strand at 2206.186 kb on - strand at 2206.210 kb on + strand at 2206.210 kb on + strand at 2206.557 kb on + strand, within EX28DRAFT_2183 at 2206.558 kb on - strand, within EX28DRAFT_2183 at 2206.654 kb on + strand, within EX28DRAFT_2183 at 2206.741 kb on - strand, within EX28DRAFT_2183 at 2206.840 kb on - strand, within EX28DRAFT_2183 at 2206.999 kb on - strand, within EX28DRAFT_2183 at 2206.999 kb on - strand, within EX28DRAFT_2183 at 2207.195 kb on + strand at 2207.195 kb on + strand at 2207.196 kb on - strand at 2207.262 kb on + strand at 2207.271 kb on + strand at 2207.348 kb on + strand at 2207.349 kb on - strand at 2207.446 kb on - strand, within EX28DRAFT_2184 at 2207.469 kb on + strand, within EX28DRAFT_2184 at 2207.569 kb on + strand, within EX28DRAFT_2184 at 2207.569 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.575 kb on + strand, within EX28DRAFT_2184 at 2207.576 kb on - strand, within EX28DRAFT_2184 at 2207.576 kb on - strand, within EX28DRAFT_2184 at 2207.576 kb on - strand, within EX28DRAFT_2184 at 2207.576 kb on - strand, within EX28DRAFT_2184 at 2207.580 kb on - strand at 2207.599 kb on + strand at 2207.599 kb on + strand at 2207.604 kb on - strand at 2207.604 kb on - strand at 2207.959 kb on - strand, within EX28DRAFT_2185 at 2207.987 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,205,241 + EX28DRAFT_2182 0.59 -0.7 2,205,242 - EX28DRAFT_2182 0.59 -0.1 2,205,608 - EX28DRAFT_2182 0.76 +0.2 2,205,611 - EX28DRAFT_2182 0.76 +0.4 2,205,611 - EX28DRAFT_2182 0.76 +0.4 2,205,625 + EX28DRAFT_2182 0.77 -0.1 2,205,626 - EX28DRAFT_2182 0.77 +0.2 2,205,816 - EX28DRAFT_2182 0.85 -0.7 2,205,845 - EX28DRAFT_2182 0.87 -1.5 2,205,845 - EX28DRAFT_2182 0.87 -0.2 2,206,082 + +0.4 2,206,090 - -1.0 2,206,185 + -0.0 2,206,185 + +0.1 2,206,186 - -0.8 2,206,210 + -1.6 2,206,210 + +0.3 2,206,557 + EX28DRAFT_2183 0.41 +2.2 2,206,558 - EX28DRAFT_2183 0.41 -1.0 2,206,654 + EX28DRAFT_2183 0.52 +0.1 2,206,741 - EX28DRAFT_2183 0.61 -0.5 2,206,840 - EX28DRAFT_2183 0.72 +1.6 2,206,999 - EX28DRAFT_2183 0.89 +1.1 2,206,999 - EX28DRAFT_2183 0.89 -0.4 2,207,195 + -1.7 2,207,195 + -2.9 2,207,196 - -1.0 2,207,262 + +0.3 2,207,271 + -0.4 2,207,348 + -0.0 2,207,349 - +0.6 2,207,446 - EX28DRAFT_2184 0.40 -0.4 2,207,469 + EX28DRAFT_2184 0.49 +0.4 2,207,569 + EX28DRAFT_2184 0.86 -0.2 2,207,569 + EX28DRAFT_2184 0.86 -0.3 2,207,575 + EX28DRAFT_2184 0.88 -0.7 2,207,575 + EX28DRAFT_2184 0.88 -0.1 2,207,575 + EX28DRAFT_2184 0.88 +0.4 2,207,575 + EX28DRAFT_2184 0.88 -0.1 2,207,575 + EX28DRAFT_2184 0.88 -0.8 2,207,575 + EX28DRAFT_2184 0.88 -0.2 2,207,576 - EX28DRAFT_2184 0.89 +0.1 2,207,576 - EX28DRAFT_2184 0.89 +0.0 2,207,576 - EX28DRAFT_2184 0.89 +0.5 2,207,576 - EX28DRAFT_2184 0.89 +0.5 2,207,580 - +0.6 2,207,599 + +0.9 2,207,599 + +0.6 2,207,604 - -0.1 2,207,604 - -0.0 2,207,959 - EX28DRAFT_2185 0.87 +0.5 2,207,987 + +0.3
Or see this region's nucleotide sequence