Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2141

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2140 and EX28DRAFT_2141 are separated by 4 nucleotidesEX28DRAFT_2141 and EX28DRAFT_2142 are separated by 192 nucleotides EX28DRAFT_2140: EX28DRAFT_2140 - glycyl-radical enzyme activating protein, at 2,160,062 to 2,160,961 _2140 EX28DRAFT_2141: EX28DRAFT_2141 - glycyl radical enzyme, PFL2/glycerol dehydratase family, at 2,160,966 to 2,163,398 _2141 EX28DRAFT_2142: EX28DRAFT_2142 - HAD-superfamily hydrolase, subfamily IIB, at 2,163,591 to 2,164,406 _2142 Position (kb) 2160 2161 2162 2163 2164Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2160.419 kb on + strand, within EX28DRAFT_2140at 2160.465 kb on - strand, within EX28DRAFT_2140at 2160.465 kb on - strand, within EX28DRAFT_2140at 2160.465 kb on - strand, within EX28DRAFT_2140at 2160.466 kb on + strand, within EX28DRAFT_2140at 2160.467 kb on - strand, within EX28DRAFT_2140at 2160.560 kb on + strand, within EX28DRAFT_2140at 2160.560 kb on + strand, within EX28DRAFT_2140at 2160.561 kb on - strand, within EX28DRAFT_2140at 2160.577 kb on - strand, within EX28DRAFT_2140at 2160.766 kb on + strand, within EX28DRAFT_2140at 2160.803 kb on - strand, within EX28DRAFT_2140at 2160.842 kb on + strand, within EX28DRAFT_2140at 2160.843 kb on - strand, within EX28DRAFT_2140at 2160.864 kb on - strand, within EX28DRAFT_2140at 2160.921 kb on - strandat 2161.004 kb on + strandat 2161.005 kb on - strandat 2161.071 kb on + strandat 2161.071 kb on + strandat 2161.083 kb on + strandat 2161.234 kb on - strand, within EX28DRAFT_2141at 2161.771 kb on - strand, within EX28DRAFT_2141at 2161.840 kb on - strand, within EX28DRAFT_2141at 2161.855 kb on - strand, within EX28DRAFT_2141at 2162.265 kb on + strand, within EX28DRAFT_2141at 2162.496 kb on + strand, within EX28DRAFT_2141at 2162.497 kb on - strand, within EX28DRAFT_2141at 2162.562 kb on - strand, within EX28DRAFT_2141at 2162.632 kb on - strand, within EX28DRAFT_2141at 2162.818 kb on - strand, within EX28DRAFT_2141at 2162.871 kb on + strand, within EX28DRAFT_2141at 2162.872 kb on - strand, within EX28DRAFT_2141at 2162.872 kb on - strand, within EX28DRAFT_2141at 2162.892 kb on + strand, within EX28DRAFT_2141at 2162.938 kb on - strand, within EX28DRAFT_2141at 2163.008 kb on + strand, within EX28DRAFT_2141at 2163.008 kb on + strand, within EX28DRAFT_2141at 2163.008 kb on + strand, within EX28DRAFT_2141at 2163.104 kb on + strand, within EX28DRAFT_2141at 2163.234 kb on - strandat 2163.241 kb on - strandat 2163.325 kb on - strandat 2163.368 kb on + strandat 2163.368 kb on + strandat 2163.390 kb on - strandat 2163.390 kb on - strandat 2163.405 kb on - strandat 2163.555 kb on - strandat 2163.591 kb on - strandat 2163.591 kb on - strandat 2163.735 kb on + strand, within EX28DRAFT_2142at 2163.735 kb on + strand, within EX28DRAFT_2142at 2163.735 kb on + strand, within EX28DRAFT_2142at 2163.979 kb on - strand, within EX28DRAFT_2142at 2164.032 kb on - strand, within EX28DRAFT_2142at 2164.032 kb on - strand, within EX28DRAFT_2142

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,160,419 + EX28DRAFT_2140 0.40 -0.2
2,160,465 - EX28DRAFT_2140 0.45 -0.9
2,160,465 - EX28DRAFT_2140 0.45 +0.5
2,160,465 - EX28DRAFT_2140 0.45 -0.8
2,160,466 + EX28DRAFT_2140 0.45 +0.2
2,160,467 - EX28DRAFT_2140 0.45 -0.3
2,160,560 + EX28DRAFT_2140 0.55 -0.1
2,160,560 + EX28DRAFT_2140 0.55 +0.4
2,160,561 - EX28DRAFT_2140 0.55 -0.2
2,160,577 - EX28DRAFT_2140 0.57 +0.8
2,160,766 + EX28DRAFT_2140 0.78 -0.6
2,160,803 - EX28DRAFT_2140 0.82 -1.8
2,160,842 + EX28DRAFT_2140 0.87 +0.2
2,160,843 - EX28DRAFT_2140 0.87 +0.2
2,160,864 - EX28DRAFT_2140 0.89 +1.3
2,160,921 - +0.0
2,161,004 + -1.0
2,161,005 - -0.5
2,161,071 + +0.0
2,161,071 + -0.0
2,161,083 + +0.2
2,161,234 - EX28DRAFT_2141 0.11 +0.3
2,161,771 - EX28DRAFT_2141 0.33 -1.6
2,161,840 - EX28DRAFT_2141 0.36 -0.4
2,161,855 - EX28DRAFT_2141 0.37 +0.6
2,162,265 + EX28DRAFT_2141 0.53 +0.6
2,162,496 + EX28DRAFT_2141 0.63 -0.9
2,162,497 - EX28DRAFT_2141 0.63 -0.1
2,162,562 - EX28DRAFT_2141 0.66 -0.8
2,162,632 - EX28DRAFT_2141 0.68 +0.0
2,162,818 - EX28DRAFT_2141 0.76 -0.4
2,162,871 + EX28DRAFT_2141 0.78 -0.5
2,162,872 - EX28DRAFT_2141 0.78 -0.1
2,162,872 - EX28DRAFT_2141 0.78 -0.4
2,162,892 + EX28DRAFT_2141 0.79 -2.0
2,162,938 - EX28DRAFT_2141 0.81 -0.3
2,163,008 + EX28DRAFT_2141 0.84 -0.5
2,163,008 + EX28DRAFT_2141 0.84 -0.8
2,163,008 + EX28DRAFT_2141 0.84 +0.0
2,163,104 + EX28DRAFT_2141 0.88 -0.5
2,163,234 - -0.3
2,163,241 - +0.0
2,163,325 - -0.5
2,163,368 + +0.5
2,163,368 + +0.2
2,163,390 - -0.0
2,163,390 - +0.5
2,163,405 - -0.8
2,163,555 - +2.1
2,163,591 - -1.0
2,163,591 - +0.2
2,163,735 + EX28DRAFT_2142 0.18 -4.1
2,163,735 + EX28DRAFT_2142 0.18 -0.2
2,163,735 + EX28DRAFT_2142 0.18 -1.7
2,163,979 - EX28DRAFT_2142 0.48 +0.3
2,164,032 - EX28DRAFT_2142 0.54 +1.4
2,164,032 - EX28DRAFT_2142 0.54 -0.3

Or see this region's nucleotide sequence