Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2001 and EX28DRAFT_2002 are separated by 9 nucleotides EX28DRAFT_2002 and EX28DRAFT_2003 overlap by 4 nucleotides EX28DRAFT_2003 and EX28DRAFT_2004 are separated by 51 nucleotides
EX28DRAFT_2001: EX28DRAFT_2001 - alkanesulfonate monooxygenase (EC 1.14.14.5), at 2,004,421 to 2,005,566
_2001
EX28DRAFT_2002: EX28DRAFT_2002 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,005,576 to 2,006,367
_2002
EX28DRAFT_2003: EX28DRAFT_2003 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,006,364 to 2,007,134
_2003
EX28DRAFT_2004: EX28DRAFT_2004 - aminopeptidase N, Escherichia coli type, at 2,007,186 to 2,009,798
_2004
Position (kb)
2005
2006
2007 Strain fitness (log2 ratio)
-1
0
1 at 2004.796 kb on - strand, within EX28DRAFT_2001 at 2004.805 kb on + strand, within EX28DRAFT_2001 at 2004.882 kb on + strand, within EX28DRAFT_2001 at 2004.882 kb on + strand, within EX28DRAFT_2001 at 2004.883 kb on - strand, within EX28DRAFT_2001 at 2004.908 kb on - strand, within EX28DRAFT_2001 at 2004.908 kb on - strand, within EX28DRAFT_2001 at 2004.944 kb on - strand, within EX28DRAFT_2001 at 2005.000 kb on + strand, within EX28DRAFT_2001 at 2005.401 kb on + strand, within EX28DRAFT_2001 at 2005.565 kb on - strand at 2005.712 kb on + strand, within EX28DRAFT_2002 at 2005.993 kb on + strand, within EX28DRAFT_2002 at 2005.994 kb on - strand, within EX28DRAFT_2002 at 2006.063 kb on + strand, within EX28DRAFT_2002 at 2006.082 kb on + strand, within EX28DRAFT_2002 at 2006.083 kb on - strand, within EX28DRAFT_2002 at 2006.084 kb on + strand, within EX28DRAFT_2002 at 2006.085 kb on - strand, within EX28DRAFT_2002 at 2006.118 kb on + strand, within EX28DRAFT_2002 at 2006.199 kb on - strand, within EX28DRAFT_2002 at 2006.199 kb on - strand, within EX28DRAFT_2002 at 2006.266 kb on + strand, within EX28DRAFT_2002 at 2006.267 kb on - strand, within EX28DRAFT_2002 at 2006.341 kb on + strand at 2006.341 kb on + strand at 2006.341 kb on + strand at 2006.341 kb on + strand at 2006.370 kb on - strand at 2006.370 kb on - strand at 2006.462 kb on + strand, within EX28DRAFT_2003 at 2006.678 kb on + strand, within EX28DRAFT_2003 at 2006.980 kb on + strand, within EX28DRAFT_2003 at 2006.995 kb on + strand, within EX28DRAFT_2003 at 2007.109 kb on + strand at 2007.119 kb on + strand at 2007.119 kb on + strand at 2007.119 kb on + strand at 2007.120 kb on - strand at 2007.120 kb on - strand at 2007.175 kb on + strand at 2007.176 kb on - strand at 2007.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,004,796 - EX28DRAFT_2001 0.33 +0.1 2,004,805 + EX28DRAFT_2001 0.34 -0.4 2,004,882 + EX28DRAFT_2001 0.40 -0.2 2,004,882 + EX28DRAFT_2001 0.40 -0.3 2,004,883 - EX28DRAFT_2001 0.40 -0.1 2,004,908 - EX28DRAFT_2001 0.42 -1.3 2,004,908 - EX28DRAFT_2001 0.42 -1.2 2,004,944 - EX28DRAFT_2001 0.46 +0.9 2,005,000 + EX28DRAFT_2001 0.51 -0.4 2,005,401 + EX28DRAFT_2001 0.86 +0.9 2,005,565 - -0.4 2,005,712 + EX28DRAFT_2002 0.17 -0.5 2,005,993 + EX28DRAFT_2002 0.53 -0.2 2,005,994 - EX28DRAFT_2002 0.53 -0.2 2,006,063 + EX28DRAFT_2002 0.61 -0.5 2,006,082 + EX28DRAFT_2002 0.64 -0.7 2,006,083 - EX28DRAFT_2002 0.64 +0.3 2,006,084 + EX28DRAFT_2002 0.64 +0.1 2,006,085 - EX28DRAFT_2002 0.64 +0.3 2,006,118 + EX28DRAFT_2002 0.68 -0.4 2,006,199 - EX28DRAFT_2002 0.79 -0.6 2,006,199 - EX28DRAFT_2002 0.79 -0.2 2,006,266 + EX28DRAFT_2002 0.87 -0.4 2,006,267 - EX28DRAFT_2002 0.87 -0.3 2,006,341 + -1.6 2,006,341 + +0.2 2,006,341 + -0.4 2,006,341 + +0.1 2,006,370 - +0.1 2,006,370 - +0.1 2,006,462 + EX28DRAFT_2003 0.13 +0.9 2,006,678 + EX28DRAFT_2003 0.41 +0.4 2,006,980 + EX28DRAFT_2003 0.80 -0.5 2,006,995 + EX28DRAFT_2003 0.82 +0.1 2,007,109 + -0.9 2,007,119 + +0.2 2,007,119 + +1.5 2,007,119 + +0.1 2,007,120 - -1.6 2,007,120 - -0.4 2,007,175 + -0.5 2,007,176 - +0.1 2,007,185 - +0.6
Or see this region's nucleotide sequence