Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1992

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1990 and EX28DRAFT_1991 are separated by 255 nucleotidesEX28DRAFT_1991 and EX28DRAFT_1992 overlap by 4 nucleotidesEX28DRAFT_1992 and EX28DRAFT_1993 are separated by 4 nucleotides EX28DRAFT_1990: EX28DRAFT_1990 - Ribosome modulation factor, at 1,991,796 to 1,991,963 _1990 EX28DRAFT_1991: EX28DRAFT_1991 - Uncharacterized protein conserved in bacteria, at 1,992,219 to 1,992,785 _1991 EX28DRAFT_1992: EX28DRAFT_1992 - Paraquat-inducible protein B, at 1,992,782 to 1,994,422 _1992 EX28DRAFT_1993: EX28DRAFT_1993 - integral membrane protein, PqiA family, at 1,994,427 to 1,995,680 _1993 Position (kb) 1992 1993 1994 1995Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1992.090 kb on - strandat 1992.144 kb on - strandat 1992.216 kb on + strandat 1992.220 kb on + strandat 1992.221 kb on - strandat 1992.301 kb on + strand, within EX28DRAFT_1991at 1992.302 kb on - strand, within EX28DRAFT_1991at 1992.435 kb on - strand, within EX28DRAFT_1991at 1992.571 kb on + strand, within EX28DRAFT_1991at 1992.572 kb on - strand, within EX28DRAFT_1991at 1992.572 kb on - strand, within EX28DRAFT_1991at 1992.709 kb on + strand, within EX28DRAFT_1991at 1992.713 kb on - strand, within EX28DRAFT_1991at 1992.719 kb on + strand, within EX28DRAFT_1991at 1992.719 kb on + strand, within EX28DRAFT_1991at 1992.723 kb on - strand, within EX28DRAFT_1991at 1992.930 kb on + strandat 1993.016 kb on - strand, within EX28DRAFT_1992at 1993.045 kb on + strand, within EX28DRAFT_1992at 1993.275 kb on + strand, within EX28DRAFT_1992at 1993.275 kb on + strand, within EX28DRAFT_1992at 1993.275 kb on + strand, within EX28DRAFT_1992at 1993.275 kb on + strand, within EX28DRAFT_1992at 1993.345 kb on + strand, within EX28DRAFT_1992at 1993.346 kb on - strand, within EX28DRAFT_1992at 1993.346 kb on - strand, within EX28DRAFT_1992at 1993.483 kb on + strand, within EX28DRAFT_1992at 1993.579 kb on - strand, within EX28DRAFT_1992at 1993.738 kb on + strand, within EX28DRAFT_1992at 1993.739 kb on - strand, within EX28DRAFT_1992at 1993.828 kb on + strand, within EX28DRAFT_1992at 1993.829 kb on - strand, within EX28DRAFT_1992at 1993.829 kb on - strand, within EX28DRAFT_1992at 1993.829 kb on - strand, within EX28DRAFT_1992at 1993.829 kb on - strand, within EX28DRAFT_1992at 1993.829 kb on - strand, within EX28DRAFT_1992at 1993.829 kb on - strand, within EX28DRAFT_1992at 1993.831 kb on + strand, within EX28DRAFT_1992at 1993.831 kb on + strand, within EX28DRAFT_1992at 1993.832 kb on - strand, within EX28DRAFT_1992at 1993.998 kb on + strand, within EX28DRAFT_1992at 1994.043 kb on + strand, within EX28DRAFT_1992at 1994.043 kb on + strand, within EX28DRAFT_1992at 1994.043 kb on + strand, within EX28DRAFT_1992at 1994.044 kb on - strand, within EX28DRAFT_1992at 1994.044 kb on - strand, within EX28DRAFT_1992at 1994.316 kb on + strandat 1994.413 kb on + strandat 1994.414 kb on - strandat 1994.428 kb on + strandat 1994.549 kb on - strandat 1994.552 kb on + strandat 1994.553 kb on - strand, within EX28DRAFT_1993at 1994.553 kb on - strand, within EX28DRAFT_1993at 1994.647 kb on + strand, within EX28DRAFT_1993at 1994.728 kb on - strand, within EX28DRAFT_1993at 1994.742 kb on - strand, within EX28DRAFT_1993at 1994.745 kb on - strand, within EX28DRAFT_1993at 1994.799 kb on + strand, within EX28DRAFT_1993at 1994.800 kb on - strand, within EX28DRAFT_1993at 1994.881 kb on + strand, within EX28DRAFT_1993at 1994.881 kb on + strand, within EX28DRAFT_1993at 1994.940 kb on + strand, within EX28DRAFT_1993at 1995.159 kb on - strand, within EX28DRAFT_1993at 1995.159 kb on - strand, within EX28DRAFT_1993at 1995.159 kb on - strand, within EX28DRAFT_1993

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,992,090 - -0.2
1,992,144 - +0.2
1,992,216 + -0.5
1,992,220 + +0.3
1,992,221 - -0.8
1,992,301 + EX28DRAFT_1991 0.14 -0.1
1,992,302 - EX28DRAFT_1991 0.15 +0.5
1,992,435 - EX28DRAFT_1991 0.38 -0.2
1,992,571 + EX28DRAFT_1991 0.62 +0.3
1,992,572 - EX28DRAFT_1991 0.62 +0.1
1,992,572 - EX28DRAFT_1991 0.62 +0.0
1,992,709 + EX28DRAFT_1991 0.86 +0.3
1,992,713 - EX28DRAFT_1991 0.87 -0.3
1,992,719 + EX28DRAFT_1991 0.88 +0.5
1,992,719 + EX28DRAFT_1991 0.88 -0.4
1,992,723 - EX28DRAFT_1991 0.89 -1.1
1,992,930 + +0.3
1,993,016 - EX28DRAFT_1992 0.14 +0.4
1,993,045 + EX28DRAFT_1992 0.16 +2.1
1,993,275 + EX28DRAFT_1992 0.30 -0.3
1,993,275 + EX28DRAFT_1992 0.30 +1.1
1,993,275 + EX28DRAFT_1992 0.30 +1.1
1,993,275 + EX28DRAFT_1992 0.30 +0.7
1,993,345 + EX28DRAFT_1992 0.34 +0.5
1,993,346 - EX28DRAFT_1992 0.34 +0.7
1,993,346 - EX28DRAFT_1992 0.34 +0.7
1,993,483 + EX28DRAFT_1992 0.43 +1.2
1,993,579 - EX28DRAFT_1992 0.49 +1.0
1,993,738 + EX28DRAFT_1992 0.58 -1.4
1,993,739 - EX28DRAFT_1992 0.58 +0.1
1,993,828 + EX28DRAFT_1992 0.64 -0.7
1,993,829 - EX28DRAFT_1992 0.64 -0.4
1,993,829 - EX28DRAFT_1992 0.64 -0.2
1,993,829 - EX28DRAFT_1992 0.64 -0.4
1,993,829 - EX28DRAFT_1992 0.64 -0.1
1,993,829 - EX28DRAFT_1992 0.64 -0.3
1,993,829 - EX28DRAFT_1992 0.64 -1.7
1,993,831 + EX28DRAFT_1992 0.64 +1.3
1,993,831 + EX28DRAFT_1992 0.64 +0.2
1,993,832 - EX28DRAFT_1992 0.64 -1.0
1,993,998 + EX28DRAFT_1992 0.74 +1.1
1,994,043 + EX28DRAFT_1992 0.77 +0.4
1,994,043 + EX28DRAFT_1992 0.77 -0.0
1,994,043 + EX28DRAFT_1992 0.77 +2.7
1,994,044 - EX28DRAFT_1992 0.77 -0.9
1,994,044 - EX28DRAFT_1992 0.77 +0.0
1,994,316 + -0.2
1,994,413 + +0.7
1,994,414 - +2.6
1,994,428 + +0.1
1,994,549 - +0.9
1,994,552 + -1.1
1,994,553 - EX28DRAFT_1993 0.10 +0.2
1,994,553 - EX28DRAFT_1993 0.10 -0.1
1,994,647 + EX28DRAFT_1993 0.18 -2.9
1,994,728 - EX28DRAFT_1993 0.24 -2.9
1,994,742 - EX28DRAFT_1993 0.25 -0.0
1,994,745 - EX28DRAFT_1993 0.25 -0.4
1,994,799 + EX28DRAFT_1993 0.30 +0.4
1,994,800 - EX28DRAFT_1993 0.30 -3.6
1,994,881 + EX28DRAFT_1993 0.36 -0.4
1,994,881 + EX28DRAFT_1993 0.36 +0.8
1,994,940 + EX28DRAFT_1993 0.41 +1.1
1,995,159 - EX28DRAFT_1993 0.58 +1.2
1,995,159 - EX28DRAFT_1993 0.58 -1.0
1,995,159 - EX28DRAFT_1993 0.58 -0.0

Or see this region's nucleotide sequence