Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1960 and EX28DRAFT_1961 are separated by 125 nucleotides EX28DRAFT_1961 and EX28DRAFT_1962 are separated by 291 nucleotides EX28DRAFT_1962 and EX28DRAFT_1963 are separated by 130 nucleotides
EX28DRAFT_1960: EX28DRAFT_1960 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,963,765 to 1,964,601
_1960
EX28DRAFT_1961: EX28DRAFT_1961 - Uncharacterized protein conserved in bacteria, at 1,964,727 to 1,964,984
_1961
EX28DRAFT_1962: EX28DRAFT_1962 - tRNA, at 1,965,276 to 1,965,363
_1962
EX28DRAFT_1963: EX28DRAFT_1963 - ABC-type oligopeptide transport system, periplasmic component, at 1,965,494 to 1,967,122
_1963
Position (kb)
1964
1965 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1963.747 kb on - strand at 1963.801 kb on + strand at 1963.801 kb on + strand at 1964.092 kb on + strand, within EX28DRAFT_1960 at 1964.269 kb on + strand, within EX28DRAFT_1960 at 1964.270 kb on - strand, within EX28DRAFT_1960 at 1964.359 kb on + strand, within EX28DRAFT_1960 at 1964.370 kb on + strand, within EX28DRAFT_1960 at 1964.464 kb on + strand, within EX28DRAFT_1960 at 1964.464 kb on + strand, within EX28DRAFT_1960 at 1964.465 kb on - strand, within EX28DRAFT_1960 at 1964.466 kb on + strand, within EX28DRAFT_1960 at 1964.466 kb on + strand, within EX28DRAFT_1960 at 1964.466 kb on + strand, within EX28DRAFT_1960 at 1964.547 kb on + strand at 1964.565 kb on + strand at 1964.565 kb on + strand at 1964.565 kb on + strand at 1964.565 kb on + strand at 1964.566 kb on - strand at 1964.599 kb on + strand at 1964.599 kb on + strand at 1964.643 kb on + strand at 1964.643 kb on + strand at 1964.686 kb on - strand at 1964.686 kb on - strand at 1964.720 kb on - strand at 1964.878 kb on + strand, within EX28DRAFT_1961 at 1964.878 kb on + strand, within EX28DRAFT_1961 at 1964.879 kb on - strand, within EX28DRAFT_1961 at 1964.927 kb on + strand, within EX28DRAFT_1961 at 1964.928 kb on - strand, within EX28DRAFT_1961 at 1964.928 kb on - strand, within EX28DRAFT_1961 at 1964.953 kb on - strand, within EX28DRAFT_1961 at 1964.953 kb on - strand, within EX28DRAFT_1961 at 1964.958 kb on - strand, within EX28DRAFT_1961 at 1964.958 kb on - strand, within EX28DRAFT_1961 at 1964.958 kb on - strand, within EX28DRAFT_1961 at 1965.000 kb on + strand at 1965.045 kb on + strand at 1965.053 kb on - strand at 1965.143 kb on + strand at 1965.144 kb on - strand at 1965.149 kb on + strand at 1965.149 kb on + strand at 1965.149 kb on + strand at 1965.149 kb on + strand at 1965.149 kb on + strand at 1965.150 kb on - strand at 1965.151 kb on + strand at 1965.152 kb on - strand at 1965.152 kb on - strand at 1965.152 kb on - strand at 1965.152 kb on - strand at 1965.155 kb on + strand at 1965.271 kb on - strand at 1965.271 kb on - strand at 1965.271 kb on - strand at 1965.271 kb on - strand at 1965.271 kb on - strand at 1965.271 kb on - strand at 1965.271 kb on - strand at 1965.273 kb on - strand at 1965.273 kb on - strand at 1965.303 kb on - strand, within EX28DRAFT_1962 at 1965.378 kb on + strand at 1965.379 kb on - strand at 1965.379 kb on - strand at 1965.381 kb on - strand at 1965.381 kb on - strand at 1965.401 kb on + strand at 1965.427 kb on + strand at 1965.449 kb on - strand at 1965.481 kb on + strand at 1965.510 kb on + strand at 1965.510 kb on + strand at 1965.510 kb on + strand at 1965.511 kb on - strand at 1965.511 kb on - strand at 1965.528 kb on + strand at 1965.529 kb on - strand at 1965.591 kb on + strand at 1965.591 kb on + strand at 1965.598 kb on - strand at 1965.614 kb on + strand at 1965.708 kb on + strand, within EX28DRAFT_1963 at 1965.709 kb on - strand, within EX28DRAFT_1963 at 1965.951 kb on + strand, within EX28DRAFT_1963 at 1965.951 kb on + strand, within EX28DRAFT_1963 at 1965.951 kb on + strand, within EX28DRAFT_1963 at 1965.952 kb on - strand, within EX28DRAFT_1963 at 1965.952 kb on - strand, within EX28DRAFT_1963
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,963,747 - -1.3 1,963,801 + +0.6 1,963,801 + -0.2 1,964,092 + EX28DRAFT_1960 0.39 +0.3 1,964,269 + EX28DRAFT_1960 0.60 -1.4 1,964,270 - EX28DRAFT_1960 0.60 -0.4 1,964,359 + EX28DRAFT_1960 0.71 +1.0 1,964,370 + EX28DRAFT_1960 0.72 +0.2 1,964,464 + EX28DRAFT_1960 0.84 +0.2 1,964,464 + EX28DRAFT_1960 0.84 +2.3 1,964,465 - EX28DRAFT_1960 0.84 +0.2 1,964,466 + EX28DRAFT_1960 0.84 -1.0 1,964,466 + EX28DRAFT_1960 0.84 +1.5 1,964,466 + EX28DRAFT_1960 0.84 -0.1 1,964,547 + -0.3 1,964,565 + -0.6 1,964,565 + -1.0 1,964,565 + -0.3 1,964,565 + -1.3 1,964,566 - +0.0 1,964,599 + -0.6 1,964,599 + +0.5 1,964,643 + -0.3 1,964,643 + -0.5 1,964,686 - -0.5 1,964,686 - +0.3 1,964,720 - +0.9 1,964,878 + EX28DRAFT_1961 0.59 -0.2 1,964,878 + EX28DRAFT_1961 0.59 -1.0 1,964,879 - EX28DRAFT_1961 0.59 -0.7 1,964,927 + EX28DRAFT_1961 0.78 -0.1 1,964,928 - EX28DRAFT_1961 0.78 +0.3 1,964,928 - EX28DRAFT_1961 0.78 -0.5 1,964,953 - EX28DRAFT_1961 0.88 -1.7 1,964,953 - EX28DRAFT_1961 0.88 -0.1 1,964,958 - EX28DRAFT_1961 0.90 +0.9 1,964,958 - EX28DRAFT_1961 0.90 +0.2 1,964,958 - EX28DRAFT_1961 0.90 +1.1 1,965,000 + -1.1 1,965,045 + -0.2 1,965,053 - +0.2 1,965,143 + +0.2 1,965,144 - -1.4 1,965,149 + +0.8 1,965,149 + -0.5 1,965,149 + +0.2 1,965,149 + +0.3 1,965,149 + +0.3 1,965,150 - -0.4 1,965,151 + -0.4 1,965,152 - -1.8 1,965,152 - -0.0 1,965,152 - +0.1 1,965,152 - -1.1 1,965,155 + -1.4 1,965,271 - +1.0 1,965,271 - -1.3 1,965,271 - -0.1 1,965,271 - +0.7 1,965,271 - +1.5 1,965,271 - +0.1 1,965,271 - +2.3 1,965,273 - +0.1 1,965,273 - +0.5 1,965,303 - EX28DRAFT_1962 0.31 +0.2 1,965,378 + +2.5 1,965,379 - +0.5 1,965,379 - +0.8 1,965,381 - +0.1 1,965,381 - -0.2 1,965,401 + -0.8 1,965,427 + -0.4 1,965,449 - -0.1 1,965,481 + +1.9 1,965,510 + -0.2 1,965,510 + +0.5 1,965,510 + -0.8 1,965,511 - +0.1 1,965,511 - -0.5 1,965,528 + +1.3 1,965,529 - -0.3 1,965,591 + -0.4 1,965,591 + +0.6 1,965,598 - +0.1 1,965,614 + +0.6 1,965,708 + EX28DRAFT_1963 0.13 +0.8 1,965,709 - EX28DRAFT_1963 0.13 +0.2 1,965,951 + EX28DRAFT_1963 0.28 -0.1 1,965,951 + EX28DRAFT_1963 0.28 +0.1 1,965,951 + EX28DRAFT_1963 0.28 -0.1 1,965,952 - EX28DRAFT_1963 0.28 -0.6 1,965,952 - EX28DRAFT_1963 0.28 -0.6
Or see this region's nucleotide sequence