Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1899

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1896 and EX28DRAFT_1897 are separated by 232 nucleotidesEX28DRAFT_1897 and EX28DRAFT_1898 are separated by 45 nucleotidesEX28DRAFT_1898 and EX28DRAFT_1899 are separated by 48 nucleotidesEX28DRAFT_1899 and EX28DRAFT_1900 are separated by 109 nucleotidesEX28DRAFT_1900 and EX28DRAFT_1901 are separated by 20 nucleotides EX28DRAFT_1896: EX28DRAFT_1896 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 1,905,166 to 1,906,104 _1896 EX28DRAFT_1897: EX28DRAFT_1897 - tRNA, at 1,906,337 to 1,906,424 _1897 EX28DRAFT_1898: EX28DRAFT_1898 - RNA, at 1,906,470 to 1,906,607 _1898 EX28DRAFT_1899: EX28DRAFT_1899 - Transcriptional regulator, at 1,906,656 to 1,907,561 _1899 EX28DRAFT_1900: EX28DRAFT_1900 - Pirin-related protein, at 1,907,671 to 1,908,531 _1900 EX28DRAFT_1901: EX28DRAFT_1901 - Amidases related to nicotinamidase, at 1,908,552 to 1,909,229 _1901 Position (kb) 1906 1907 1908Strain fitness (log2 ratio) -3 -2 -1 0 1at 1905.693 kb on + strand, within EX28DRAFT_1896at 1905.784 kb on + strand, within EX28DRAFT_1896at 1905.800 kb on + strand, within EX28DRAFT_1896at 1905.800 kb on + strand, within EX28DRAFT_1896at 1905.983 kb on + strand, within EX28DRAFT_1896at 1905.984 kb on - strand, within EX28DRAFT_1896at 1906.064 kb on + strandat 1906.088 kb on + strandat 1906.096 kb on + strandat 1906.097 kb on - strandat 1906.101 kb on - strandat 1906.172 kb on + strandat 1906.218 kb on + strandat 1906.218 kb on + strandat 1906.254 kb on + strandat 1906.297 kb on + strandat 1906.429 kb on + strandat 1906.429 kb on + strandat 1906.429 kb on + strandat 1906.429 kb on + strandat 1906.604 kb on + strandat 1906.604 kb on + strandat 1906.604 kb on + strandat 1906.604 kb on + strandat 1906.604 kb on + strandat 1906.604 kb on + strandat 1906.606 kb on + strandat 1906.606 kb on + strandat 1906.607 kb on - strandat 1906.678 kb on + strandat 1906.958 kb on + strand, within EX28DRAFT_1899at 1906.959 kb on - strand, within EX28DRAFT_1899at 1906.964 kb on + strand, within EX28DRAFT_1899at 1906.964 kb on + strand, within EX28DRAFT_1899at 1906.965 kb on - strand, within EX28DRAFT_1899at 1907.092 kb on - strand, within EX28DRAFT_1899at 1907.095 kb on - strand, within EX28DRAFT_1899at 1907.354 kb on + strand, within EX28DRAFT_1899at 1907.355 kb on - strand, within EX28DRAFT_1899at 1907.365 kb on + strand, within EX28DRAFT_1899at 1907.516 kb on - strandat 1907.561 kb on + strandat 1907.561 kb on + strandat 1907.561 kb on + strandat 1907.666 kb on + strandat 1907.666 kb on + strandat 1907.667 kb on - strandat 1907.667 kb on - strandat 1907.752 kb on + strandat 1908.099 kb on + strand, within EX28DRAFT_1900at 1908.169 kb on + strand, within EX28DRAFT_1900at 1908.223 kb on - strand, within EX28DRAFT_1900at 1908.318 kb on + strand, within EX28DRAFT_1900at 1908.405 kb on - strand, within EX28DRAFT_1900at 1908.505 kb on - strandat 1908.536 kb on - strandat 1908.538 kb on + strandat 1908.539 kb on - strandat 1908.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,905,693 + EX28DRAFT_1896 0.56 +0.4
1,905,784 + EX28DRAFT_1896 0.66 -0.4
1,905,800 + EX28DRAFT_1896 0.68 +0.2
1,905,800 + EX28DRAFT_1896 0.68 +0.3
1,905,983 + EX28DRAFT_1896 0.87 -0.1
1,905,984 - EX28DRAFT_1896 0.87 +1.2
1,906,064 + +0.4
1,906,088 + -1.0
1,906,096 + +1.5
1,906,097 - -2.0
1,906,101 - +0.2
1,906,172 + -1.0
1,906,218 + +0.6
1,906,218 + -1.1
1,906,254 + -0.0
1,906,297 + +0.2
1,906,429 + +0.7
1,906,429 + -0.5
1,906,429 + +0.3
1,906,429 + -0.0
1,906,604 + +1.6
1,906,604 + +0.3
1,906,604 + -0.2
1,906,604 + -1.0
1,906,604 + -0.9
1,906,604 + +1.5
1,906,606 + +0.4
1,906,606 + -0.0
1,906,607 - -3.0
1,906,678 + +0.7
1,906,958 + EX28DRAFT_1899 0.33 +0.4
1,906,959 - EX28DRAFT_1899 0.33 +0.2
1,906,964 + EX28DRAFT_1899 0.34 +1.1
1,906,964 + EX28DRAFT_1899 0.34 +0.0
1,906,965 - EX28DRAFT_1899 0.34 +0.5
1,907,092 - EX28DRAFT_1899 0.48 -1.7
1,907,095 - EX28DRAFT_1899 0.48 -0.4
1,907,354 + EX28DRAFT_1899 0.77 +0.5
1,907,355 - EX28DRAFT_1899 0.77 -2.2
1,907,365 + EX28DRAFT_1899 0.78 -2.0
1,907,516 - +0.3
1,907,561 + +0.2
1,907,561 + -1.0
1,907,561 + -0.2
1,907,666 + -0.6
1,907,666 + -0.1
1,907,667 - +0.6
1,907,667 - -0.9
1,907,752 + +0.1
1,908,099 + EX28DRAFT_1900 0.50 -0.2
1,908,169 + EX28DRAFT_1900 0.58 +0.2
1,908,223 - EX28DRAFT_1900 0.64 +0.4
1,908,318 + EX28DRAFT_1900 0.75 +0.9
1,908,405 - EX28DRAFT_1900 0.85 -0.1
1,908,505 - +0.7
1,908,536 - -1.1
1,908,538 + +0.0
1,908,539 - +0.1
1,908,550 + -0.0

Or see this region's nucleotide sequence