Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1711

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1710 and EX28DRAFT_1711 are separated by 44 nucleotidesEX28DRAFT_1711 and EX28DRAFT_1712 are separated by 10 nucleotidesEX28DRAFT_1712 and EX28DRAFT_1713 are separated by 40 nucleotides EX28DRAFT_1710: EX28DRAFT_1710 - acetyl-CoA acetyltransferases, at 1,726,025 to 1,727,206 _1710 EX28DRAFT_1711: EX28DRAFT_1711 - H+/gluconate symporter and related permeases, at 1,727,251 to 1,728,642 _1711 EX28DRAFT_1712: EX28DRAFT_1712 - 3-hydroxybutyrate dehydrogenase, at 1,728,653 to 1,729,423 _1712 EX28DRAFT_1713: EX28DRAFT_1713 - Uncharacterized conserved protein, at 1,729,464 to 1,730,906 _1713 Position (kb) 1727 1728 1729Strain fitness (log2 ratio) -2 -1 0 1at 1726.300 kb on - strand, within EX28DRAFT_1710at 1726.660 kb on + strand, within EX28DRAFT_1710at 1726.862 kb on + strand, within EX28DRAFT_1710at 1727.118 kb on - strandat 1727.227 kb on + strandat 1727.227 kb on + strandat 1727.235 kb on - strandat 1727.320 kb on - strandat 1727.320 kb on - strandat 1727.434 kb on + strand, within EX28DRAFT_1711at 1727.434 kb on + strand, within EX28DRAFT_1711at 1727.434 kb on + strand, within EX28DRAFT_1711at 1727.434 kb on + strand, within EX28DRAFT_1711at 1727.435 kb on - strand, within EX28DRAFT_1711at 1727.582 kb on - strand, within EX28DRAFT_1711at 1727.745 kb on + strand, within EX28DRAFT_1711at 1727.746 kb on - strand, within EX28DRAFT_1711at 1727.746 kb on - strand, within EX28DRAFT_1711at 1727.817 kb on + strand, within EX28DRAFT_1711at 1727.818 kb on - strand, within EX28DRAFT_1711at 1727.818 kb on - strand, within EX28DRAFT_1711at 1727.859 kb on + strand, within EX28DRAFT_1711at 1727.979 kb on - strand, within EX28DRAFT_1711at 1728.381 kb on + strand, within EX28DRAFT_1711at 1728.382 kb on - strand, within EX28DRAFT_1711at 1728.436 kb on - strand, within EX28DRAFT_1711at 1728.489 kb on + strand, within EX28DRAFT_1711at 1728.585 kb on + strandat 1728.724 kb on - strandat 1728.921 kb on + strand, within EX28DRAFT_1712at 1729.128 kb on + strand, within EX28DRAFT_1712at 1729.129 kb on - strand, within EX28DRAFT_1712at 1729.519 kb on + strandat 1729.519 kb on + strandat 1729.520 kb on - strandat 1729.572 kb on + strandat 1729.582 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,726,300 - EX28DRAFT_1710 0.23 -0.5
1,726,660 + EX28DRAFT_1710 0.54 -0.2
1,726,862 + EX28DRAFT_1710 0.71 +0.2
1,727,118 - +0.2
1,727,227 + +1.1
1,727,227 + +0.9
1,727,235 - +0.3
1,727,320 - -0.2
1,727,320 - -0.5
1,727,434 + EX28DRAFT_1711 0.13 -1.0
1,727,434 + EX28DRAFT_1711 0.13 +0.2
1,727,434 + EX28DRAFT_1711 0.13 -0.1
1,727,434 + EX28DRAFT_1711 0.13 +0.0
1,727,435 - EX28DRAFT_1711 0.13 +0.2
1,727,582 - EX28DRAFT_1711 0.24 -2.1
1,727,745 + EX28DRAFT_1711 0.35 +0.7
1,727,746 - EX28DRAFT_1711 0.36 -0.4
1,727,746 - EX28DRAFT_1711 0.36 +0.0
1,727,817 + EX28DRAFT_1711 0.41 -0.7
1,727,818 - EX28DRAFT_1711 0.41 -1.3
1,727,818 - EX28DRAFT_1711 0.41 -0.4
1,727,859 + EX28DRAFT_1711 0.44 -1.1
1,727,979 - EX28DRAFT_1711 0.52 -1.2
1,728,381 + EX28DRAFT_1711 0.81 +0.3
1,728,382 - EX28DRAFT_1711 0.81 +0.6
1,728,436 - EX28DRAFT_1711 0.85 +0.6
1,728,489 + EX28DRAFT_1711 0.89 +0.2
1,728,585 + -0.4
1,728,724 - -0.0
1,728,921 + EX28DRAFT_1712 0.35 +0.0
1,729,128 + EX28DRAFT_1712 0.62 +0.3
1,729,129 - EX28DRAFT_1712 0.62 -0.6
1,729,519 + +0.1
1,729,519 + -0.5
1,729,520 - -0.8
1,729,572 + +0.9
1,729,582 + -1.7

Or see this region's nucleotide sequence