Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1706 and EX28DRAFT_1707 are separated by 19 nucleotides EX28DRAFT_1707 and EX28DRAFT_1708 are separated by 140 nucleotides EX28DRAFT_1708 and EX28DRAFT_1709 are separated by 2 nucleotides
EX28DRAFT_1706: EX28DRAFT_1706 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 1,722,540 to 1,723,586
_1706
EX28DRAFT_1707: EX28DRAFT_1707 - Transcriptional regulator, at 1,723,606 to 1,724,508
_1707
EX28DRAFT_1708: EX28DRAFT_1708 - 3-oxoacid CoA-transferase, A subunit, at 1,724,649 to 1,725,356
_1708
EX28DRAFT_1709: EX28DRAFT_1709 - 3-oxoacid CoA-transferase, B subunit, at 1,725,359 to 1,726,015
_1709
Position (kb)
1723
1724
1725 Strain fitness (log2 ratio)
-1
0
1
2 at 1722.751 kb on - strand, within EX28DRAFT_1706 at 1722.817 kb on - strand, within EX28DRAFT_1706 at 1722.928 kb on + strand, within EX28DRAFT_1706 at 1722.929 kb on - strand, within EX28DRAFT_1706 at 1723.197 kb on + strand, within EX28DRAFT_1706 at 1723.198 kb on - strand, within EX28DRAFT_1706 at 1723.232 kb on + strand, within EX28DRAFT_1706 at 1723.233 kb on - strand, within EX28DRAFT_1706 at 1723.257 kb on + strand, within EX28DRAFT_1706 at 1723.257 kb on + strand, within EX28DRAFT_1706 at 1723.271 kb on + strand, within EX28DRAFT_1706 at 1723.571 kb on - strand at 1723.669 kb on - strand at 1723.680 kb on + strand at 1723.680 kb on + strand at 1723.680 kb on + strand at 1723.680 kb on + strand at 1723.681 kb on - strand at 1723.738 kb on - strand, within EX28DRAFT_1707 at 1724.173 kb on + strand, within EX28DRAFT_1707 at 1724.173 kb on + strand, within EX28DRAFT_1707 at 1724.173 kb on + strand, within EX28DRAFT_1707 at 1724.244 kb on + strand, within EX28DRAFT_1707 at 1724.467 kb on + strand at 1724.663 kb on + strand at 1724.948 kb on + strand, within EX28DRAFT_1708 at 1724.948 kb on + strand, within EX28DRAFT_1708 at 1725.078 kb on + strand, within EX28DRAFT_1708 at 1725.078 kb on + strand, within EX28DRAFT_1708 at 1725.079 kb on - strand, within EX28DRAFT_1708 at 1725.269 kb on + strand, within EX28DRAFT_1708 at 1725.283 kb on - strand, within EX28DRAFT_1708 at 1725.363 kb on + strand at 1725.414 kb on - strand at 1725.416 kb on + strand at 1725.459 kb on - strand, within EX28DRAFT_1709
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,722,751 - EX28DRAFT_1706 0.20 -0.6 1,722,817 - EX28DRAFT_1706 0.26 +0.3 1,722,928 + EX28DRAFT_1706 0.37 +0.3 1,722,929 - EX28DRAFT_1706 0.37 -0.3 1,723,197 + EX28DRAFT_1706 0.63 +0.4 1,723,198 - EX28DRAFT_1706 0.63 +1.2 1,723,232 + EX28DRAFT_1706 0.66 +0.9 1,723,233 - EX28DRAFT_1706 0.66 -0.1 1,723,257 + EX28DRAFT_1706 0.68 +0.1 1,723,257 + EX28DRAFT_1706 0.68 -0.1 1,723,271 + EX28DRAFT_1706 0.70 +0.2 1,723,571 - +0.5 1,723,669 - +0.6 1,723,680 + +0.1 1,723,680 + +0.8 1,723,680 + -1.5 1,723,680 + +0.3 1,723,681 - +0.5 1,723,738 - EX28DRAFT_1707 0.15 +1.0 1,724,173 + EX28DRAFT_1707 0.63 -0.4 1,724,173 + EX28DRAFT_1707 0.63 -0.2 1,724,173 + EX28DRAFT_1707 0.63 +0.1 1,724,244 + EX28DRAFT_1707 0.71 +0.9 1,724,467 + -0.5 1,724,663 + -0.1 1,724,948 + EX28DRAFT_1708 0.42 +1.7 1,724,948 + EX28DRAFT_1708 0.42 +0.5 1,725,078 + EX28DRAFT_1708 0.61 -0.5 1,725,078 + EX28DRAFT_1708 0.61 -0.5 1,725,079 - EX28DRAFT_1708 0.61 -1.1 1,725,269 + EX28DRAFT_1708 0.88 +0.1 1,725,283 - EX28DRAFT_1708 0.90 -1.4 1,725,363 + +0.8 1,725,414 - +0.5 1,725,416 + +0.3 1,725,459 - EX28DRAFT_1709 0.15 +2.0
Or see this region's nucleotide sequence