Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1701 and EX28DRAFT_1702 are separated by 5 nucleotides EX28DRAFT_1702 and EX28DRAFT_1703 are separated by 3 nucleotides
EX28DRAFT_1701: EX28DRAFT_1701 - RNA, at 1,714,718 to 1,714,821
_1701
EX28DRAFT_1702: EX28DRAFT_1702 - Beta-glucosidase-related glycosidases, at 1,714,827 to 1,717,202
_1702
EX28DRAFT_1703: EX28DRAFT_1703 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 1,717,206 to 1,718,606
_1703
Position (kb)
1714
1715
1716
1717
1718 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1714.536 kb on - strand at 1714.536 kb on - strand at 1714.573 kb on + strand at 1714.642 kb on + strand at 1714.643 kb on - strand at 1714.656 kb on + strand at 1714.785 kb on - strand, within EX28DRAFT_1701 at 1715.021 kb on + strand at 1715.329 kb on + strand, within EX28DRAFT_1702 at 1715.330 kb on - strand, within EX28DRAFT_1702 at 1715.330 kb on - strand, within EX28DRAFT_1702 at 1715.330 kb on - strand, within EX28DRAFT_1702 at 1715.333 kb on - strand, within EX28DRAFT_1702 at 1715.333 kb on - strand, within EX28DRAFT_1702 at 1715.492 kb on + strand, within EX28DRAFT_1702 at 1715.493 kb on - strand, within EX28DRAFT_1702 at 1715.494 kb on + strand, within EX28DRAFT_1702 at 1715.494 kb on + strand, within EX28DRAFT_1702 at 1715.495 kb on - strand, within EX28DRAFT_1702 at 1716.140 kb on + strand, within EX28DRAFT_1702 at 1716.338 kb on + strand, within EX28DRAFT_1702 at 1716.516 kb on + strand, within EX28DRAFT_1702 at 1716.563 kb on - strand, within EX28DRAFT_1702 at 1716.697 kb on - strand, within EX28DRAFT_1702 at 1716.802 kb on + strand, within EX28DRAFT_1702 at 1717.146 kb on + strand at 1717.188 kb on - strand at 1717.189 kb on + strand at 1717.190 kb on - strand at 1717.190 kb on - strand at 1717.190 kb on - strand at 1717.190 kb on - strand at 1717.193 kb on + strand at 1717.193 kb on + strand at 1717.193 kb on + strand at 1717.194 kb on - strand at 1717.194 kb on - strand at 1717.216 kb on - strand at 1717.314 kb on + strand at 1717.321 kb on + strand at 1717.321 kb on + strand at 1717.321 kb on + strand at 1717.322 kb on - strand at 1717.617 kb on - strand, within EX28DRAFT_1703 at 1717.628 kb on + strand, within EX28DRAFT_1703 at 1717.689 kb on - strand, within EX28DRAFT_1703 at 1717.701 kb on - strand, within EX28DRAFT_1703 at 1717.796 kb on + strand, within EX28DRAFT_1703 at 1717.797 kb on - strand, within EX28DRAFT_1703 at 1717.831 kb on + strand, within EX28DRAFT_1703 at 1717.832 kb on - strand, within EX28DRAFT_1703 at 1717.836 kb on + strand, within EX28DRAFT_1703 at 1717.836 kb on + strand, within EX28DRAFT_1703 at 1717.840 kb on + strand, within EX28DRAFT_1703 at 1717.840 kb on + strand, within EX28DRAFT_1703 at 1717.844 kb on - strand, within EX28DRAFT_1703 at 1717.890 kb on - strand, within EX28DRAFT_1703 at 1717.893 kb on - strand, within EX28DRAFT_1703 at 1717.907 kb on + strand, within EX28DRAFT_1703 at 1717.907 kb on + strand, within EX28DRAFT_1703 at 1717.907 kb on + strand, within EX28DRAFT_1703 at 1717.964 kb on + strand, within EX28DRAFT_1703 at 1717.964 kb on + strand, within EX28DRAFT_1703 at 1717.965 kb on - strand, within EX28DRAFT_1703 at 1717.965 kb on - strand, within EX28DRAFT_1703 at 1718.053 kb on + strand, within EX28DRAFT_1703 at 1718.086 kb on - strand, within EX28DRAFT_1703
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,714,536 - +1.7 1,714,536 - -2.2 1,714,573 + -0.7 1,714,642 + -2.1 1,714,643 - -0.8 1,714,656 + -0.7 1,714,785 - EX28DRAFT_1701 0.64 -0.2 1,715,021 + -0.2 1,715,329 + EX28DRAFT_1702 0.21 -0.5 1,715,330 - EX28DRAFT_1702 0.21 -0.7 1,715,330 - EX28DRAFT_1702 0.21 -0.4 1,715,330 - EX28DRAFT_1702 0.21 -1.1 1,715,333 - EX28DRAFT_1702 0.21 -0.4 1,715,333 - EX28DRAFT_1702 0.21 -0.1 1,715,492 + EX28DRAFT_1702 0.28 +0.9 1,715,493 - EX28DRAFT_1702 0.28 +0.3 1,715,494 + EX28DRAFT_1702 0.28 -0.6 1,715,494 + EX28DRAFT_1702 0.28 -1.1 1,715,495 - EX28DRAFT_1702 0.28 +0.6 1,716,140 + EX28DRAFT_1702 0.55 -0.8 1,716,338 + EX28DRAFT_1702 0.64 +2.8 1,716,516 + EX28DRAFT_1702 0.71 +0.1 1,716,563 - EX28DRAFT_1702 0.73 +0.7 1,716,697 - EX28DRAFT_1702 0.79 +0.4 1,716,802 + EX28DRAFT_1702 0.83 -0.5 1,717,146 + +0.2 1,717,188 - -1.1 1,717,189 + -2.4 1,717,190 - +0.9 1,717,190 - +0.0 1,717,190 - -0.3 1,717,190 - -1.0 1,717,193 + -0.4 1,717,193 + -0.5 1,717,193 + -0.0 1,717,194 - -1.9 1,717,194 - -1.6 1,717,216 - -0.5 1,717,314 + +0.7 1,717,321 + -0.0 1,717,321 + +0.6 1,717,321 + +0.6 1,717,322 - +0.1 1,717,617 - EX28DRAFT_1703 0.29 +0.6 1,717,628 + EX28DRAFT_1703 0.30 +0.8 1,717,689 - EX28DRAFT_1703 0.34 -0.6 1,717,701 - EX28DRAFT_1703 0.35 -1.9 1,717,796 + EX28DRAFT_1703 0.42 -0.1 1,717,797 - EX28DRAFT_1703 0.42 +0.5 1,717,831 + EX28DRAFT_1703 0.45 +0.7 1,717,832 - EX28DRAFT_1703 0.45 -0.9 1,717,836 + EX28DRAFT_1703 0.45 -1.6 1,717,836 + EX28DRAFT_1703 0.45 +0.1 1,717,840 + EX28DRAFT_1703 0.45 -0.6 1,717,840 + EX28DRAFT_1703 0.45 +0.3 1,717,844 - EX28DRAFT_1703 0.46 +0.4 1,717,890 - EX28DRAFT_1703 0.49 -1.0 1,717,893 - EX28DRAFT_1703 0.49 +0.4 1,717,907 + EX28DRAFT_1703 0.50 -0.1 1,717,907 + EX28DRAFT_1703 0.50 -1.4 1,717,907 + EX28DRAFT_1703 0.50 +0.0 1,717,964 + EX28DRAFT_1703 0.54 -1.6 1,717,964 + EX28DRAFT_1703 0.54 +0.0 1,717,965 - EX28DRAFT_1703 0.54 +1.9 1,717,965 - EX28DRAFT_1703 0.54 -0.5 1,718,053 + EX28DRAFT_1703 0.60 -0.7 1,718,086 - EX28DRAFT_1703 0.63 -0.1
Or see this region's nucleotide sequence