Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1669 and EX28DRAFT_1670 are separated by 2 nucleotides EX28DRAFT_1670 and EX28DRAFT_1671 overlap by 1 nucleotides EX28DRAFT_1671 and EX28DRAFT_1672 overlap by 17 nucleotides EX28DRAFT_1672 and EX28DRAFT_1673 overlap by 20 nucleotides EX28DRAFT_1673 and EX28DRAFT_1674 are separated by 110 nucleotides
EX28DRAFT_1669: EX28DRAFT_1669 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,682,422 to 1,683,258
_1669
EX28DRAFT_1670: EX28DRAFT_1670 - ABC-type polar amino acid transport system, ATPase component, at 1,683,261 to 1,684,076
_1670
EX28DRAFT_1671: EX28DRAFT_1671 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,684,076 to 1,684,852
_1671
EX28DRAFT_1672: EX28DRAFT_1672 - ABC-type amino acid transport system, permease component, at 1,684,836 to 1,685,522
_1672
EX28DRAFT_1673: EX28DRAFT_1673 - Protein of unknown function (DUF2767), at 1,685,503 to 1,685,712
_1673
EX28DRAFT_1674: EX28DRAFT_1674 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 1,685,823 to 1,686,635
_1674
Position (kb) 1684
1685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1683.240 kb on + strand at 1683.241 kb on - strand at 1683.245 kb on + strand at 1683.256 kb on + strand at 1683.257 kb on - strand at 1683.257 kb on - strand at 1683.257 kb on - strand at 1683.818 kb on + strand, within EX28DRAFT_1670 at 1683.858 kb on + strand, within EX28DRAFT_1670 at 1683.858 kb on + strand, within EX28DRAFT_1670 at 1683.954 kb on - strand, within EX28DRAFT_1670 at 1684.074 kb on + strand at 1684.074 kb on + strand at 1684.128 kb on + strand at 1684.128 kb on + strand at 1684.204 kb on + strand, within EX28DRAFT_1671 at 1684.204 kb on + strand, within EX28DRAFT_1671 at 1684.205 kb on - strand, within EX28DRAFT_1671 at 1684.205 kb on - strand, within EX28DRAFT_1671 at 1684.417 kb on - strand, within EX28DRAFT_1671 at 1684.444 kb on + strand, within EX28DRAFT_1671 at 1684.444 kb on + strand, within EX28DRAFT_1671 at 1684.612 kb on + strand, within EX28DRAFT_1671 at 1684.691 kb on + strand, within EX28DRAFT_1671 at 1684.691 kb on + strand, within EX28DRAFT_1671 at 1684.692 kb on - strand, within EX28DRAFT_1671 at 1684.692 kb on - strand, within EX28DRAFT_1671 at 1684.692 kb on - strand, within EX28DRAFT_1671 at 1684.693 kb on + strand, within EX28DRAFT_1671 at 1684.717 kb on + strand, within EX28DRAFT_1671 at 1684.764 kb on + strand, within EX28DRAFT_1671 at 1684.764 kb on + strand, within EX28DRAFT_1671 at 1684.875 kb on + strand at 1684.875 kb on + strand at 1684.976 kb on - strand, within EX28DRAFT_1672 at 1685.088 kb on + strand, within EX28DRAFT_1672 at 1685.088 kb on + strand, within EX28DRAFT_1672 at 1685.159 kb on + strand, within EX28DRAFT_1672 at 1685.221 kb on - strand, within EX28DRAFT_1672 at 1685.298 kb on - strand, within EX28DRAFT_1672 at 1685.342 kb on + strand, within EX28DRAFT_1672 at 1685.342 kb on + strand, within EX28DRAFT_1672 at 1685.343 kb on - strand, within EX28DRAFT_1672 at 1685.455 kb on - strand at 1685.455 kb on - strand at 1685.610 kb on + strand, within EX28DRAFT_1673 at 1685.611 kb on - strand, within EX28DRAFT_1673 at 1685.611 kb on - strand, within EX28DRAFT_1673 at 1685.682 kb on - strand, within EX28DRAFT_1673 at 1685.734 kb on + strand at 1685.748 kb on - strand at 1685.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,683,240 + +0.1 1,683,241 - -0.8 1,683,245 + -0.2 1,683,256 + -0.4 1,683,257 - +0.0 1,683,257 - -2.0 1,683,257 - -0.5 1,683,818 + EX28DRAFT_1670 0.68 -1.2 1,683,858 + EX28DRAFT_1670 0.73 -1.9 1,683,858 + EX28DRAFT_1670 0.73 -0.1 1,683,954 - EX28DRAFT_1670 0.85 +0.2 1,684,074 + -0.4 1,684,074 + -0.1 1,684,128 + -0.6 1,684,128 + -2.5 1,684,204 + EX28DRAFT_1671 0.16 -0.2 1,684,204 + EX28DRAFT_1671 0.16 +1.0 1,684,205 - EX28DRAFT_1671 0.17 -0.2 1,684,205 - EX28DRAFT_1671 0.17 -0.3 1,684,417 - EX28DRAFT_1671 0.44 -0.1 1,684,444 + EX28DRAFT_1671 0.47 -0.6 1,684,444 + EX28DRAFT_1671 0.47 +0.1 1,684,612 + EX28DRAFT_1671 0.69 -0.3 1,684,691 + EX28DRAFT_1671 0.79 -0.5 1,684,691 + EX28DRAFT_1671 0.79 -1.1 1,684,692 - EX28DRAFT_1671 0.79 -0.9 1,684,692 - EX28DRAFT_1671 0.79 +0.1 1,684,692 - EX28DRAFT_1671 0.79 +0.1 1,684,693 + EX28DRAFT_1671 0.79 -0.4 1,684,717 + EX28DRAFT_1671 0.82 +2.0 1,684,764 + EX28DRAFT_1671 0.89 -1.0 1,684,764 + EX28DRAFT_1671 0.89 +0.4 1,684,875 + +1.1 1,684,875 + -0.6 1,684,976 - EX28DRAFT_1672 0.20 +1.6 1,685,088 + EX28DRAFT_1672 0.37 +0.0 1,685,088 + EX28DRAFT_1672 0.37 -1.4 1,685,159 + EX28DRAFT_1672 0.47 +0.3 1,685,221 - EX28DRAFT_1672 0.56 -0.3 1,685,298 - EX28DRAFT_1672 0.67 -1.2 1,685,342 + EX28DRAFT_1672 0.74 -2.0 1,685,342 + EX28DRAFT_1672 0.74 -3.2 1,685,343 - EX28DRAFT_1672 0.74 -0.7 1,685,455 - +0.3 1,685,455 - +0.1 1,685,610 + EX28DRAFT_1673 0.51 +0.9 1,685,611 - EX28DRAFT_1673 0.51 -0.0 1,685,611 - EX28DRAFT_1673 0.51 +0.4 1,685,682 - EX28DRAFT_1673 0.85 +0.0 1,685,734 + +0.2 1,685,748 - +0.1 1,685,748 - -0.3
Or see this region's nucleotide sequence