Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1547

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1546 and EX28DRAFT_1547 are separated by 39 nucleotidesEX28DRAFT_1547 and EX28DRAFT_1548 overlap by 4 nucleotidesEX28DRAFT_1548 and EX28DRAFT_1549 are separated by 92 nucleotides EX28DRAFT_1546: EX28DRAFT_1546 - transporter, basic amino acid/polyamine antiporter (APA) family, at 1,562,222 to 1,563,604 _1546 EX28DRAFT_1547: EX28DRAFT_1547 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,563,644 to 1,564,366 _1547 EX28DRAFT_1548: EX28DRAFT_1548 - Uncharacterized membrane protein required for alginate biosynthesis, at 1,564,363 to 1,564,698 _1548 EX28DRAFT_1549: EX28DRAFT_1549 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,564,791 to 1,565,543 _1549 Position (kb) 1563 1564 1565Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1562.658 kb on + strand, within EX28DRAFT_1546at 1562.658 kb on + strand, within EX28DRAFT_1546at 1562.731 kb on + strand, within EX28DRAFT_1546at 1562.746 kb on + strand, within EX28DRAFT_1546at 1563.284 kb on + strand, within EX28DRAFT_1546at 1563.284 kb on + strand, within EX28DRAFT_1546at 1563.285 kb on - strand, within EX28DRAFT_1546at 1563.329 kb on + strand, within EX28DRAFT_1546at 1563.330 kb on - strand, within EX28DRAFT_1546at 1563.336 kb on + strand, within EX28DRAFT_1546at 1563.347 kb on + strand, within EX28DRAFT_1546at 1563.347 kb on + strand, within EX28DRAFT_1546at 1563.348 kb on - strand, within EX28DRAFT_1546at 1563.381 kb on - strand, within EX28DRAFT_1546at 1563.381 kb on - strand, within EX28DRAFT_1546at 1563.404 kb on - strand, within EX28DRAFT_1546at 1563.425 kb on + strand, within EX28DRAFT_1546at 1563.440 kb on - strand, within EX28DRAFT_1546at 1563.490 kb on + strandat 1563.495 kb on - strandat 1563.549 kb on + strandat 1563.550 kb on - strandat 1563.562 kb on - strandat 1563.640 kb on + strandat 1563.752 kb on + strand, within EX28DRAFT_1547at 1563.764 kb on + strand, within EX28DRAFT_1547at 1564.046 kb on - strand, within EX28DRAFT_1547at 1564.298 kb on + strandat 1564.299 kb on - strandat 1564.316 kb on + strandat 1564.316 kb on + strandat 1564.391 kb on - strandat 1564.484 kb on + strand, within EX28DRAFT_1548at 1564.503 kb on + strand, within EX28DRAFT_1548at 1564.530 kb on + strand, within EX28DRAFT_1548at 1564.566 kb on + strand, within EX28DRAFT_1548at 1564.567 kb on - strand, within EX28DRAFT_1548at 1564.567 kb on - strand, within EX28DRAFT_1548at 1564.567 kb on - strand, within EX28DRAFT_1548at 1564.567 kb on - strand, within EX28DRAFT_1548at 1564.568 kb on + strand, within EX28DRAFT_1548at 1564.568 kb on + strand, within EX28DRAFT_1548at 1564.569 kb on - strand, within EX28DRAFT_1548at 1564.618 kb on - strand, within EX28DRAFT_1548at 1564.619 kb on + strand, within EX28DRAFT_1548at 1564.619 kb on + strand, within EX28DRAFT_1548at 1564.655 kb on - strand, within EX28DRAFT_1548at 1564.655 kb on - strand, within EX28DRAFT_1548at 1564.683 kb on + strandat 1564.728 kb on - strandat 1564.794 kb on + strandat 1564.794 kb on + strandat 1564.795 kb on - strandat 1564.795 kb on - strandat 1564.795 kb on - strandat 1564.795 kb on - strandat 1564.795 kb on - strandat 1564.826 kb on + strandat 1564.827 kb on - strandat 1564.842 kb on + strandat 1564.843 kb on - strandat 1564.901 kb on + strand, within EX28DRAFT_1549at 1565.048 kb on + strand, within EX28DRAFT_1549at 1565.118 kb on + strand, within EX28DRAFT_1549at 1565.119 kb on - strand, within EX28DRAFT_1549

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,562,658 + EX28DRAFT_1546 0.32 +0.8
1,562,658 + EX28DRAFT_1546 0.32 -3.7
1,562,731 + EX28DRAFT_1546 0.37 -0.9
1,562,746 + EX28DRAFT_1546 0.38 -0.7
1,563,284 + EX28DRAFT_1546 0.77 +0.1
1,563,284 + EX28DRAFT_1546 0.77 -1.9
1,563,285 - EX28DRAFT_1546 0.77 -0.0
1,563,329 + EX28DRAFT_1546 0.80 +2.0
1,563,330 - EX28DRAFT_1546 0.80 -0.0
1,563,336 + EX28DRAFT_1546 0.81 -1.1
1,563,347 + EX28DRAFT_1546 0.81 +0.6
1,563,347 + EX28DRAFT_1546 0.81 +0.4
1,563,348 - EX28DRAFT_1546 0.81 +0.4
1,563,381 - EX28DRAFT_1546 0.84 -0.1
1,563,381 - EX28DRAFT_1546 0.84 +0.4
1,563,404 - EX28DRAFT_1546 0.85 +0.2
1,563,425 + EX28DRAFT_1546 0.87 +0.1
1,563,440 - EX28DRAFT_1546 0.88 +0.4
1,563,490 + +0.5
1,563,495 - +1.9
1,563,549 + -0.4
1,563,550 - -0.4
1,563,562 - +2.2
1,563,640 + -1.9
1,563,752 + EX28DRAFT_1547 0.15 -1.7
1,563,764 + EX28DRAFT_1547 0.17 -2.0
1,564,046 - EX28DRAFT_1547 0.56 -0.3
1,564,298 + +0.2
1,564,299 - -0.8
1,564,316 + -0.2
1,564,316 + -0.4
1,564,391 - +0.7
1,564,484 + EX28DRAFT_1548 0.36 -1.8
1,564,503 + EX28DRAFT_1548 0.42 -0.5
1,564,530 + EX28DRAFT_1548 0.50 -1.6
1,564,566 + EX28DRAFT_1548 0.60 +1.4
1,564,567 - EX28DRAFT_1548 0.61 -0.8
1,564,567 - EX28DRAFT_1548 0.61 -2.0
1,564,567 - EX28DRAFT_1548 0.61 +0.7
1,564,567 - EX28DRAFT_1548 0.61 +0.6
1,564,568 + EX28DRAFT_1548 0.61 -0.3
1,564,568 + EX28DRAFT_1548 0.61 -0.2
1,564,569 - EX28DRAFT_1548 0.61 -0.3
1,564,618 - EX28DRAFT_1548 0.76 -0.7
1,564,619 + EX28DRAFT_1548 0.76 +0.0
1,564,619 + EX28DRAFT_1548 0.76 -0.6
1,564,655 - EX28DRAFT_1548 0.87 -1.3
1,564,655 - EX28DRAFT_1548 0.87 +0.3
1,564,683 + -0.6
1,564,728 - -0.5
1,564,794 + -0.9
1,564,794 + -0.3
1,564,795 - +0.3
1,564,795 - -1.7
1,564,795 - -1.8
1,564,795 - +0.6
1,564,795 - -0.5
1,564,826 + -0.1
1,564,827 - -0.0
1,564,842 + -1.8
1,564,843 - -0.6
1,564,901 + EX28DRAFT_1549 0.15 +0.5
1,565,048 + EX28DRAFT_1549 0.34 +0.0
1,565,118 + EX28DRAFT_1549 0.43 +0.0
1,565,119 - EX28DRAFT_1549 0.44 -0.3

Or see this region's nucleotide sequence