Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1519

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1518 and EX28DRAFT_1519 are separated by 78 nucleotidesEX28DRAFT_1519 and EX28DRAFT_1520 overlap by 4 nucleotides EX28DRAFT_1518: EX28DRAFT_1518 - Signal transduction histidine kinase, at 1,531,163 to 1,532,359 _1518 EX28DRAFT_1519: EX28DRAFT_1519 - RND family efflux transporter, MFP subunit, at 1,532,438 to 1,533,586 _1519 EX28DRAFT_1520: EX28DRAFT_1520 - Cation/multidrug efflux pump, at 1,533,583 to 1,536,660 _1520 Position (kb) 1532 1533 1534Strain fitness (log2 ratio) -3 -2 -1 0 1at 1531.630 kb on + strand, within EX28DRAFT_1518at 1531.631 kb on - strand, within EX28DRAFT_1518at 1531.631 kb on - strand, within EX28DRAFT_1518at 1531.750 kb on - strand, within EX28DRAFT_1518at 1532.090 kb on + strand, within EX28DRAFT_1518at 1532.317 kb on - strandat 1532.317 kb on - strandat 1532.406 kb on + strandat 1532.425 kb on - strandat 1532.437 kb on + strandat 1532.482 kb on + strandat 1532.482 kb on + strandat 1532.483 kb on - strandat 1532.483 kb on - strandat 1532.486 kb on + strandat 1532.486 kb on + strandat 1532.487 kb on - strandat 1532.487 kb on - strandat 1532.615 kb on + strand, within EX28DRAFT_1519at 1532.616 kb on - strand, within EX28DRAFT_1519at 1533.421 kb on + strand, within EX28DRAFT_1519at 1533.467 kb on + strand, within EX28DRAFT_1519at 1533.468 kb on - strand, within EX28DRAFT_1519at 1533.468 kb on - strand, within EX28DRAFT_1519at 1533.468 kb on - strand, within EX28DRAFT_1519at 1533.468 kb on - strand, within EX28DRAFT_1519at 1533.470 kb on - strand, within EX28DRAFT_1519at 1533.610 kb on - strandat 1533.691 kb on + strandat 1533.692 kb on - strandat 1533.726 kb on + strandat 1533.727 kb on - strandat 1533.842 kb on - strandat 1534.042 kb on - strand, within EX28DRAFT_1520at 1534.361 kb on - strand, within EX28DRAFT_1520

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,531,630 + EX28DRAFT_1518 0.39 +0.1
1,531,631 - EX28DRAFT_1518 0.39 -2.4
1,531,631 - EX28DRAFT_1518 0.39 -0.7
1,531,750 - EX28DRAFT_1518 0.49 -0.2
1,532,090 + EX28DRAFT_1518 0.77 -1.0
1,532,317 - +0.2
1,532,317 - +0.2
1,532,406 + -1.4
1,532,425 - +0.5
1,532,437 + -0.2
1,532,482 + +1.2
1,532,482 + +1.2
1,532,483 - +0.9
1,532,483 - -2.3
1,532,486 + -0.2
1,532,486 + -0.5
1,532,487 - -0.4
1,532,487 - -3.5
1,532,615 + EX28DRAFT_1519 0.15 -0.1
1,532,616 - EX28DRAFT_1519 0.15 -0.2
1,533,421 + EX28DRAFT_1519 0.86 +0.1
1,533,467 + EX28DRAFT_1519 0.90 -0.1
1,533,468 - EX28DRAFT_1519 0.90 +0.3
1,533,468 - EX28DRAFT_1519 0.90 -0.0
1,533,468 - EX28DRAFT_1519 0.90 -0.0
1,533,468 - EX28DRAFT_1519 0.90 +0.6
1,533,470 - EX28DRAFT_1519 0.90 +0.0
1,533,610 - +0.3
1,533,691 + +0.0
1,533,692 - +0.0
1,533,726 + +1.7
1,533,727 - -0.1
1,533,842 - -0.3
1,534,042 - EX28DRAFT_1520 0.15 -1.4
1,534,361 - EX28DRAFT_1520 0.25 +0.7

Or see this region's nucleotide sequence