Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1470 and EX28DRAFT_1471 are separated by 137 nucleotides EX28DRAFT_1471 and EX28DRAFT_1472 are separated by 96 nucleotides
EX28DRAFT_1470: EX28DRAFT_1470 - Signal transduction histidine kinase, at 1,483,229 to 1,484,617
_1470
EX28DRAFT_1471: EX28DRAFT_1471 - Predicted transcriptional regulator, at 1,484,755 to 1,485,234
_1471
EX28DRAFT_1472: EX28DRAFT_1472 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 1,485,331 to 1,488,486
_1472
Position (kb)
1484
1485
1486 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1483.834 kb on + strand, within EX28DRAFT_1470 at 1483.867 kb on - strand, within EX28DRAFT_1470 at 1484.312 kb on - strand, within EX28DRAFT_1470 at 1484.336 kb on + strand, within EX28DRAFT_1470 at 1484.337 kb on - strand, within EX28DRAFT_1470 at 1484.337 kb on - strand, within EX28DRAFT_1470 at 1484.547 kb on + strand at 1484.612 kb on - strand at 1484.664 kb on + strand at 1484.673 kb on + strand at 1484.673 kb on + strand at 1484.680 kb on + strand at 1484.680 kb on + strand at 1484.682 kb on + strand at 1484.699 kb on + strand at 1484.700 kb on - strand at 1484.759 kb on + strand at 1485.177 kb on + strand, within EX28DRAFT_1471 at 1485.177 kb on + strand, within EX28DRAFT_1471 at 1485.178 kb on - strand, within EX28DRAFT_1471 at 1485.178 kb on - strand, within EX28DRAFT_1471 at 1485.178 kb on - strand, within EX28DRAFT_1471 at 1485.232 kb on + strand at 1485.233 kb on - strand at 1485.381 kb on + strand at 1485.391 kb on + strand at 1485.391 kb on + strand at 1485.395 kb on + strand at 1485.526 kb on - strand at 1485.545 kb on - strand at 1485.545 kb on - strand at 1485.556 kb on + strand at 1485.636 kb on + strand at 1485.760 kb on - strand, within EX28DRAFT_1472 at 1485.927 kb on + strand, within EX28DRAFT_1472 at 1486.043 kb on + strand, within EX28DRAFT_1472 at 1486.044 kb on - strand, within EX28DRAFT_1472
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,483,834 + EX28DRAFT_1470 0.44 -0.2 1,483,867 - EX28DRAFT_1470 0.46 +0.2 1,484,312 - EX28DRAFT_1470 0.78 +0.4 1,484,336 + EX28DRAFT_1470 0.80 +0.9 1,484,337 - EX28DRAFT_1470 0.80 -0.1 1,484,337 - EX28DRAFT_1470 0.80 -1.1 1,484,547 + -0.2 1,484,612 - -0.8 1,484,664 + -1.0 1,484,673 + -1.4 1,484,673 + -0.9 1,484,680 + +0.3 1,484,680 + +0.2 1,484,682 + +0.3 1,484,699 + -0.0 1,484,700 - -2.2 1,484,759 + +0.1 1,485,177 + EX28DRAFT_1471 0.88 -2.4 1,485,177 + EX28DRAFT_1471 0.88 -1.6 1,485,178 - EX28DRAFT_1471 0.88 -3.0 1,485,178 - EX28DRAFT_1471 0.88 -0.4 1,485,178 - EX28DRAFT_1471 0.88 -0.7 1,485,232 + +1.0 1,485,233 - -0.0 1,485,381 + +0.3 1,485,391 + -0.8 1,485,391 + +0.9 1,485,395 + +0.0 1,485,526 - -0.7 1,485,545 - -0.4 1,485,545 - +0.2 1,485,556 + +0.6 1,485,636 + -1.1 1,485,760 - EX28DRAFT_1472 0.14 -0.7 1,485,927 + EX28DRAFT_1472 0.19 -0.9 1,486,043 + EX28DRAFT_1472 0.23 +0.0 1,486,044 - EX28DRAFT_1472 0.23 +0.2
Or see this region's nucleotide sequence