Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1434 and EX28DRAFT_1435 are separated by 362 nucleotides EX28DRAFT_1435 and EX28DRAFT_1436 are separated by 19 nucleotides
EX28DRAFT_1434: EX28DRAFT_1434 - Protein of unknown function (DUF4225), at 1,445,279 to 1,446,034
_1434
EX28DRAFT_1435: EX28DRAFT_1435 - Lactate dehydrogenase and related dehydrogenases, at 1,446,397 to 1,447,386
_1435
EX28DRAFT_1436: EX28DRAFT_1436 - Major Facilitator Superfamily, at 1,447,406 to 1,448,614
_1436
Position (kb)
1446
1447
1448 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1445.471 kb on - strand, within EX28DRAFT_1434 at 1445.516 kb on + strand, within EX28DRAFT_1434 at 1445.516 kb on + strand, within EX28DRAFT_1434 at 1445.517 kb on - strand, within EX28DRAFT_1434 at 1445.549 kb on + strand, within EX28DRAFT_1434 at 1445.583 kb on + strand, within EX28DRAFT_1434 at 1445.583 kb on + strand, within EX28DRAFT_1434 at 1445.584 kb on - strand, within EX28DRAFT_1434 at 1445.584 kb on - strand, within EX28DRAFT_1434 at 1445.599 kb on - strand, within EX28DRAFT_1434 at 1445.621 kb on - strand, within EX28DRAFT_1434 at 1445.626 kb on + strand, within EX28DRAFT_1434 at 1445.689 kb on - strand, within EX28DRAFT_1434 at 1445.725 kb on + strand, within EX28DRAFT_1434 at 1445.798 kb on + strand, within EX28DRAFT_1434 at 1445.798 kb on + strand, within EX28DRAFT_1434 at 1445.798 kb on + strand, within EX28DRAFT_1434 at 1445.798 kb on + strand, within EX28DRAFT_1434 at 1445.798 kb on + strand, within EX28DRAFT_1434 at 1445.798 kb on + strand, within EX28DRAFT_1434 at 1445.799 kb on - strand, within EX28DRAFT_1434 at 1445.799 kb on - strand, within EX28DRAFT_1434 at 1445.799 kb on - strand, within EX28DRAFT_1434 at 1445.816 kb on - strand, within EX28DRAFT_1434 at 1445.825 kb on + strand, within EX28DRAFT_1434 at 1445.825 kb on + strand, within EX28DRAFT_1434 at 1445.826 kb on - strand, within EX28DRAFT_1434 at 1446.022 kb on + strand at 1446.061 kb on - strand at 1446.064 kb on - strand at 1446.067 kb on - strand at 1446.069 kb on + strand at 1446.118 kb on + strand at 1446.165 kb on + strand at 1446.166 kb on - strand at 1446.166 kb on - strand at 1446.185 kb on - strand at 1446.185 kb on - strand at 1446.188 kb on - strand at 1446.204 kb on + strand at 1446.267 kb on + strand at 1446.279 kb on - strand at 1446.285 kb on + strand at 1446.286 kb on - strand at 1446.289 kb on + strand at 1446.289 kb on + strand at 1446.290 kb on - strand at 1446.290 kb on - strand at 1446.290 kb on - strand at 1446.290 kb on - strand at 1446.290 kb on - strand at 1446.290 kb on - strand at 1446.301 kb on + strand at 1446.308 kb on + strand at 1446.364 kb on + strand at 1446.397 kb on - strand at 1446.411 kb on - strand at 1446.414 kb on + strand at 1446.414 kb on + strand at 1446.607 kb on + strand, within EX28DRAFT_1435 at 1446.608 kb on - strand, within EX28DRAFT_1435 at 1446.958 kb on + strand, within EX28DRAFT_1435 at 1447.030 kb on + strand, within EX28DRAFT_1435 at 1447.030 kb on + strand, within EX28DRAFT_1435 at 1447.031 kb on - strand, within EX28DRAFT_1435 at 1447.175 kb on - strand, within EX28DRAFT_1435 at 1447.384 kb on + strand at 1447.407 kb on + strand at 1447.521 kb on + strand at 1447.771 kb on + strand, within EX28DRAFT_1436 at 1447.772 kb on - strand, within EX28DRAFT_1436 at 1447.775 kb on + strand, within EX28DRAFT_1436 at 1447.869 kb on + strand, within EX28DRAFT_1436 at 1447.994 kb on - strand, within EX28DRAFT_1436
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,445,471 - EX28DRAFT_1434 0.25 +0.2 1,445,516 + EX28DRAFT_1434 0.31 -0.1 1,445,516 + EX28DRAFT_1434 0.31 -0.4 1,445,517 - EX28DRAFT_1434 0.31 -0.1 1,445,549 + EX28DRAFT_1434 0.36 -0.4 1,445,583 + EX28DRAFT_1434 0.40 +0.3 1,445,583 + EX28DRAFT_1434 0.40 +0.5 1,445,584 - EX28DRAFT_1434 0.40 -0.3 1,445,584 - EX28DRAFT_1434 0.40 +0.5 1,445,599 - EX28DRAFT_1434 0.42 -0.2 1,445,621 - EX28DRAFT_1434 0.45 +0.5 1,445,626 + EX28DRAFT_1434 0.46 +0.7 1,445,689 - EX28DRAFT_1434 0.54 +0.1 1,445,725 + EX28DRAFT_1434 0.59 +0.5 1,445,798 + EX28DRAFT_1434 0.69 +0.2 1,445,798 + EX28DRAFT_1434 0.69 -1.0 1,445,798 + EX28DRAFT_1434 0.69 -2.8 1,445,798 + EX28DRAFT_1434 0.69 -1.9 1,445,798 + EX28DRAFT_1434 0.69 -0.4 1,445,798 + EX28DRAFT_1434 0.69 -1.0 1,445,799 - EX28DRAFT_1434 0.69 +0.4 1,445,799 - EX28DRAFT_1434 0.69 +1.1 1,445,799 - EX28DRAFT_1434 0.69 +0.1 1,445,816 - EX28DRAFT_1434 0.71 +0.4 1,445,825 + EX28DRAFT_1434 0.72 +1.5 1,445,825 + EX28DRAFT_1434 0.72 -1.3 1,445,826 - EX28DRAFT_1434 0.72 +0.4 1,446,022 + +0.7 1,446,061 - -1.1 1,446,064 - +1.5 1,446,067 - +0.8 1,446,069 + +0.3 1,446,118 + +1.4 1,446,165 + +0.1 1,446,166 - -1.0 1,446,166 - -0.5 1,446,185 - -0.4 1,446,185 - -1.6 1,446,188 - +0.2 1,446,204 + +0.1 1,446,267 + -1.4 1,446,279 - -2.0 1,446,285 + +0.1 1,446,286 - +0.7 1,446,289 + +0.4 1,446,289 + -0.7 1,446,290 - -0.4 1,446,290 - -1.1 1,446,290 - +0.6 1,446,290 - -0.8 1,446,290 - -0.3 1,446,290 - +0.4 1,446,301 + +0.3 1,446,308 + +0.0 1,446,364 + +0.5 1,446,397 - -0.2 1,446,411 - +0.0 1,446,414 + -0.2 1,446,414 + +0.2 1,446,607 + EX28DRAFT_1435 0.21 +1.4 1,446,608 - EX28DRAFT_1435 0.21 +0.6 1,446,958 + EX28DRAFT_1435 0.57 +0.5 1,447,030 + EX28DRAFT_1435 0.64 +0.3 1,447,030 + EX28DRAFT_1435 0.64 +1.4 1,447,031 - EX28DRAFT_1435 0.64 +0.2 1,447,175 - EX28DRAFT_1435 0.79 -1.4 1,447,384 + -0.1 1,447,407 + +0.2 1,447,521 + -0.1 1,447,771 + EX28DRAFT_1436 0.30 +0.2 1,447,772 - EX28DRAFT_1436 0.30 +0.8 1,447,775 + EX28DRAFT_1436 0.31 +0.3 1,447,869 + EX28DRAFT_1436 0.38 +1.2 1,447,994 - EX28DRAFT_1436 0.49 +0.3
Or see this region's nucleotide sequence