Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1413 and EX28DRAFT_1414 are separated by 1 nucleotides EX28DRAFT_1414 and EX28DRAFT_1415 are separated by 2 nucleotides EX28DRAFT_1415 and EX28DRAFT_1416 overlap by 4 nucleotides
EX28DRAFT_1413: EX28DRAFT_1413 - 3-hydroxyacyl-CoA dehydrogenase PaaC, at 1,421,317 to 1,422,741
_1413
EX28DRAFT_1414: EX28DRAFT_1414 - phenylacetate degradation probable enoyl-CoA hydratase paaB, at 1,422,743 to 1,423,528
_1414
EX28DRAFT_1415: EX28DRAFT_1415 - Enoyl-CoA hydratase/carnithine racemase, at 1,423,531 to 1,424,298
_1415
EX28DRAFT_1416: EX28DRAFT_1416 - phenylacetate-CoA oxygenase/reductase, PaaK subunit, at 1,424,295 to 1,425,365
_1416
Position (kb)
1422
1423
1424 Strain fitness (log2 ratio)
-2
-1
0
1 at 1421.783 kb on + strand, within EX28DRAFT_1413 at 1421.785 kb on + strand, within EX28DRAFT_1413 at 1421.840 kb on + strand, within EX28DRAFT_1413 at 1421.841 kb on - strand, within EX28DRAFT_1413 at 1421.898 kb on - strand, within EX28DRAFT_1413 at 1422.388 kb on - strand, within EX28DRAFT_1413 at 1422.388 kb on - strand, within EX28DRAFT_1413 at 1422.388 kb on - strand, within EX28DRAFT_1413 at 1422.644 kb on + strand at 1422.730 kb on + strand at 1422.731 kb on - strand at 1422.731 kb on - strand at 1422.744 kb on + strand at 1422.745 kb on - strand at 1422.956 kb on - strand, within EX28DRAFT_1414 at 1423.267 kb on + strand, within EX28DRAFT_1414 at 1423.615 kb on - strand, within EX28DRAFT_1415 at 1423.813 kb on - strand, within EX28DRAFT_1415 at 1423.896 kb on + strand, within EX28DRAFT_1415 at 1424.402 kb on - strand, within EX28DRAFT_1416 at 1424.445 kb on - strand, within EX28DRAFT_1416
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,421,783 + EX28DRAFT_1413 0.33 -0.8 1,421,785 + EX28DRAFT_1413 0.33 -1.4 1,421,840 + EX28DRAFT_1413 0.37 +0.7 1,421,841 - EX28DRAFT_1413 0.37 -0.7 1,421,898 - EX28DRAFT_1413 0.41 +0.4 1,422,388 - EX28DRAFT_1413 0.75 -2.1 1,422,388 - EX28DRAFT_1413 0.75 -0.1 1,422,388 - EX28DRAFT_1413 0.75 -1.0 1,422,644 + -0.9 1,422,730 + -0.5 1,422,731 - +0.5 1,422,731 - -0.8 1,422,744 + -0.1 1,422,745 - +0.6 1,422,956 - EX28DRAFT_1414 0.27 -2.1 1,423,267 + EX28DRAFT_1414 0.67 -1.6 1,423,615 - EX28DRAFT_1415 0.11 +0.6 1,423,813 - EX28DRAFT_1415 0.37 +0.6 1,423,896 + EX28DRAFT_1415 0.48 -0.2 1,424,402 - EX28DRAFT_1416 0.10 -0.4 1,424,445 - EX28DRAFT_1416 0.14 +0.3
Or see this region's nucleotide sequence