Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1395 and EX28DRAFT_1396 are separated by 337 nucleotides EX28DRAFT_1396 and EX28DRAFT_1397 are separated by 64 nucleotides EX28DRAFT_1397 and EX28DRAFT_1398 are separated by 267 nucleotides
EX28DRAFT_1395: EX28DRAFT_1395 - Putative NADPH-quinone reductase (modulator of drug activity B), at 1,406,658 to 1,407,257
_1395
EX28DRAFT_1396: EX28DRAFT_1396 - Amidases related to nicotinamidase, at 1,407,595 to 1,408,134
_1396
EX28DRAFT_1397: EX28DRAFT_1397 - cupin fold metalloprotein, WbuC family, at 1,408,199 to 1,408,675
_1397
EX28DRAFT_1398: EX28DRAFT_1398 - hypothetical protein, at 1,408,943 to 1,409,413
_1398
Position (kb)
1407
1408
1409 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1406.678 kb on + strand at 1406.678 kb on + strand at 1406.745 kb on - strand, within EX28DRAFT_1395 at 1406.771 kb on + strand, within EX28DRAFT_1395 at 1406.842 kb on + strand, within EX28DRAFT_1395 at 1406.843 kb on - strand, within EX28DRAFT_1395 at 1406.845 kb on - strand, within EX28DRAFT_1395 at 1406.875 kb on + strand, within EX28DRAFT_1395 at 1406.877 kb on - strand, within EX28DRAFT_1395 at 1407.004 kb on - strand, within EX28DRAFT_1395 at 1407.006 kb on - strand, within EX28DRAFT_1395 at 1407.006 kb on - strand, within EX28DRAFT_1395 at 1407.041 kb on - strand, within EX28DRAFT_1395 at 1407.109 kb on - strand, within EX28DRAFT_1395 at 1407.189 kb on + strand, within EX28DRAFT_1395 at 1407.251 kb on + strand at 1407.369 kb on + strand at 1407.370 kb on - strand at 1407.379 kb on + strand at 1407.385 kb on + strand at 1407.386 kb on - strand at 1407.386 kb on - strand at 1407.393 kb on + strand at 1407.393 kb on + strand at 1407.404 kb on - strand at 1407.406 kb on - strand at 1407.417 kb on + strand at 1407.438 kb on - strand at 1407.513 kb on - strand at 1407.513 kb on - strand at 1407.557 kb on + strand at 1407.557 kb on + strand at 1407.558 kb on - strand at 1407.558 kb on - strand at 1407.617 kb on + strand at 1407.621 kb on + strand at 1408.012 kb on - strand, within EX28DRAFT_1396 at 1408.120 kb on - strand at 1408.422 kb on - strand, within EX28DRAFT_1397 at 1408.422 kb on - strand, within EX28DRAFT_1397 at 1408.533 kb on + strand, within EX28DRAFT_1397 at 1408.533 kb on + strand, within EX28DRAFT_1397 at 1408.533 kb on + strand, within EX28DRAFT_1397 at 1408.534 kb on - strand, within EX28DRAFT_1397 at 1408.534 kb on - strand, within EX28DRAFT_1397 at 1408.534 kb on - strand, within EX28DRAFT_1397 at 1408.534 kb on - strand, within EX28DRAFT_1397 at 1408.537 kb on + strand, within EX28DRAFT_1397 at 1408.592 kb on + strand, within EX28DRAFT_1397 at 1408.593 kb on - strand, within EX28DRAFT_1397 at 1408.593 kb on - strand, within EX28DRAFT_1397 at 1408.664 kb on - strand at 1408.677 kb on + strand at 1408.677 kb on + strand at 1408.677 kb on + strand at 1408.677 kb on + strand at 1408.678 kb on - strand at 1408.731 kb on + strand at 1408.731 kb on + strand at 1408.731 kb on + strand at 1408.732 kb on - strand at 1408.827 kb on - strand at 1408.968 kb on + strand at 1409.038 kb on + strand, within EX28DRAFT_1398
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,406,678 + -0.3 1,406,678 + -0.4 1,406,745 - EX28DRAFT_1395 0.14 +0.6 1,406,771 + EX28DRAFT_1395 0.19 +0.8 1,406,842 + EX28DRAFT_1395 0.31 +0.1 1,406,843 - EX28DRAFT_1395 0.31 +0.9 1,406,845 - EX28DRAFT_1395 0.31 -0.2 1,406,875 + EX28DRAFT_1395 0.36 +0.0 1,406,877 - EX28DRAFT_1395 0.36 +0.4 1,407,004 - EX28DRAFT_1395 0.58 +0.5 1,407,006 - EX28DRAFT_1395 0.58 -1.0 1,407,006 - EX28DRAFT_1395 0.58 +0.0 1,407,041 - EX28DRAFT_1395 0.64 -0.9 1,407,109 - EX28DRAFT_1395 0.75 +0.1 1,407,189 + EX28DRAFT_1395 0.89 -0.8 1,407,251 + -0.6 1,407,369 + +0.3 1,407,370 - -1.5 1,407,379 + -0.3 1,407,385 + -0.0 1,407,386 - +0.4 1,407,386 - -1.3 1,407,393 + -0.3 1,407,393 + +0.1 1,407,404 - -1.9 1,407,406 - +0.1 1,407,417 + +0.4 1,407,438 - +0.4 1,407,513 - +0.8 1,407,513 - -0.2 1,407,557 + -0.2 1,407,557 + -1.1 1,407,558 - -0.1 1,407,558 - +0.3 1,407,617 + -1.0 1,407,621 + -3.9 1,408,012 - EX28DRAFT_1396 0.77 -1.2 1,408,120 - -1.0 1,408,422 - EX28DRAFT_1397 0.47 -0.2 1,408,422 - EX28DRAFT_1397 0.47 -2.7 1,408,533 + EX28DRAFT_1397 0.70 +0.1 1,408,533 + EX28DRAFT_1397 0.70 -0.3 1,408,533 + EX28DRAFT_1397 0.70 -1.1 1,408,534 - EX28DRAFT_1397 0.70 -0.1 1,408,534 - EX28DRAFT_1397 0.70 +3.3 1,408,534 - EX28DRAFT_1397 0.70 -0.9 1,408,534 - EX28DRAFT_1397 0.70 +0.7 1,408,537 + EX28DRAFT_1397 0.71 +0.5 1,408,592 + EX28DRAFT_1397 0.82 +0.9 1,408,593 - EX28DRAFT_1397 0.83 -0.3 1,408,593 - EX28DRAFT_1397 0.83 +0.3 1,408,664 - -0.1 1,408,677 + -3.1 1,408,677 + -0.0 1,408,677 + -2.8 1,408,677 + -0.5 1,408,678 - -0.3 1,408,731 + -1.4 1,408,731 + +0.1 1,408,731 + +0.1 1,408,732 - -0.3 1,408,827 - +0.2 1,408,968 + +0.2 1,409,038 + EX28DRAFT_1398 0.20 -0.9
Or see this region's nucleotide sequence