Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1380

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1378 and EX28DRAFT_1379 are separated by 18 nucleotidesEX28DRAFT_1379 and EX28DRAFT_1380 are separated by 68 nucleotidesEX28DRAFT_1380 and EX28DRAFT_1381 are separated by 54 nucleotidesEX28DRAFT_1381 and EX28DRAFT_1382 are separated by 51 nucleotides EX28DRAFT_1377: EX28DRAFT_1377 - hypothetical protein, at 1,391,464 to 1,392,252 _1377 EX28DRAFT_1378: EX28DRAFT_1378 - Acetyltransferases, at 1,392,233 to 1,392,745 _1378 EX28DRAFT_1379: EX28DRAFT_1379 - Lactoylglutathione lyase and related lyases, at 1,392,764 to 1,393,168 _1379 EX28DRAFT_1380: EX28DRAFT_1380 - transcriptional regulator, HxlR family, at 1,393,237 to 1,393,611 _1380 EX28DRAFT_1381: EX28DRAFT_1381 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,393,666 to 1,394,445 _1381 EX28DRAFT_1382: EX28DRAFT_1382 - transcriptional regulator, TetR family, at 1,394,497 to 1,395,075 _1382 Position (kb) 1393 1394Strain fitness (log2 ratio) -3 -2 -1 0 1at 1392.299 kb on - strand, within EX28DRAFT_1378at 1392.372 kb on + strand, within EX28DRAFT_1378at 1392.373 kb on - strand, within EX28DRAFT_1378at 1392.413 kb on - strand, within EX28DRAFT_1378at 1392.430 kb on - strand, within EX28DRAFT_1378at 1392.558 kb on + strand, within EX28DRAFT_1378at 1392.558 kb on + strand, within EX28DRAFT_1378at 1392.559 kb on - strand, within EX28DRAFT_1378at 1392.699 kb on - strandat 1392.752 kb on + strandat 1392.787 kb on - strandat 1392.833 kb on - strand, within EX28DRAFT_1379at 1392.877 kb on + strand, within EX28DRAFT_1379at 1393.060 kb on + strand, within EX28DRAFT_1379at 1393.068 kb on - strand, within EX28DRAFT_1379at 1393.087 kb on + strand, within EX28DRAFT_1379at 1393.087 kb on + strand, within EX28DRAFT_1379at 1393.087 kb on + strand, within EX28DRAFT_1379at 1393.088 kb on - strand, within EX28DRAFT_1379at 1393.095 kb on + strand, within EX28DRAFT_1379at 1393.098 kb on + strand, within EX28DRAFT_1379at 1393.099 kb on - strand, within EX28DRAFT_1379at 1393.099 kb on - strand, within EX28DRAFT_1379at 1393.116 kb on + strand, within EX28DRAFT_1379at 1393.183 kb on - strandat 1393.187 kb on - strandat 1393.187 kb on - strandat 1393.187 kb on - strandat 1393.300 kb on + strand, within EX28DRAFT_1380at 1393.300 kb on + strand, within EX28DRAFT_1380at 1393.356 kb on - strand, within EX28DRAFT_1380at 1393.356 kb on - strand, within EX28DRAFT_1380at 1393.491 kb on + strand, within EX28DRAFT_1380at 1393.491 kb on + strand, within EX28DRAFT_1380at 1393.495 kb on + strand, within EX28DRAFT_1380at 1393.561 kb on - strand, within EX28DRAFT_1380at 1393.563 kb on - strand, within EX28DRAFT_1380at 1393.632 kb on - strandat 1393.802 kb on + strand, within EX28DRAFT_1381at 1393.989 kb on - strand, within EX28DRAFT_1381at 1394.007 kb on - strand, within EX28DRAFT_1381at 1394.013 kb on - strand, within EX28DRAFT_1381at 1394.061 kb on + strand, within EX28DRAFT_1381at 1394.147 kb on - strand, within EX28DRAFT_1381at 1394.147 kb on - strand, within EX28DRAFT_1381at 1394.152 kb on - strand, within EX28DRAFT_1381at 1394.275 kb on + strand, within EX28DRAFT_1381at 1394.276 kb on - strand, within EX28DRAFT_1381at 1394.578 kb on - strand, within EX28DRAFT_1382

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,392,299 - EX28DRAFT_1378 0.13 -0.6
1,392,372 + EX28DRAFT_1378 0.27 -0.3
1,392,373 - EX28DRAFT_1378 0.27 +0.3
1,392,413 - EX28DRAFT_1378 0.35 +0.4
1,392,430 - EX28DRAFT_1378 0.38 +1.1
1,392,558 + EX28DRAFT_1378 0.63 +0.4
1,392,558 + EX28DRAFT_1378 0.63 +0.8
1,392,559 - EX28DRAFT_1378 0.64 +0.2
1,392,699 - +0.8
1,392,752 + -0.1
1,392,787 - -0.1
1,392,833 - EX28DRAFT_1379 0.17 -3.2
1,392,877 + EX28DRAFT_1379 0.28 +0.3
1,393,060 + EX28DRAFT_1379 0.73 -0.3
1,393,068 - EX28DRAFT_1379 0.75 -0.0
1,393,087 + EX28DRAFT_1379 0.80 -1.0
1,393,087 + EX28DRAFT_1379 0.80 -0.2
1,393,087 + EX28DRAFT_1379 0.80 -1.9
1,393,088 - EX28DRAFT_1379 0.80 -0.0
1,393,095 + EX28DRAFT_1379 0.82 -0.6
1,393,098 + EX28DRAFT_1379 0.82 -1.6
1,393,099 - EX28DRAFT_1379 0.83 +0.1
1,393,099 - EX28DRAFT_1379 0.83 -0.0
1,393,116 + EX28DRAFT_1379 0.87 -0.8
1,393,183 - +0.5
1,393,187 - -2.7
1,393,187 - +0.7
1,393,187 - +0.7
1,393,300 + EX28DRAFT_1380 0.17 +0.3
1,393,300 + EX28DRAFT_1380 0.17 -0.1
1,393,356 - EX28DRAFT_1380 0.32 -0.0
1,393,356 - EX28DRAFT_1380 0.32 +0.7
1,393,491 + EX28DRAFT_1380 0.68 -1.0
1,393,491 + EX28DRAFT_1380 0.68 +1.0
1,393,495 + EX28DRAFT_1380 0.69 +0.6
1,393,561 - EX28DRAFT_1380 0.86 -0.3
1,393,563 - EX28DRAFT_1380 0.87 +0.4
1,393,632 - -0.2
1,393,802 + EX28DRAFT_1381 0.17 -0.3
1,393,989 - EX28DRAFT_1381 0.41 +0.4
1,394,007 - EX28DRAFT_1381 0.44 +0.7
1,394,013 - EX28DRAFT_1381 0.44 +0.1
1,394,061 + EX28DRAFT_1381 0.51 -0.2
1,394,147 - EX28DRAFT_1381 0.62 -1.5
1,394,147 - EX28DRAFT_1381 0.62 -0.5
1,394,152 - EX28DRAFT_1381 0.62 +0.1
1,394,275 + EX28DRAFT_1381 0.78 +0.1
1,394,276 - EX28DRAFT_1381 0.78 -0.2
1,394,578 - EX28DRAFT_1382 0.14 +0.0

Or see this region's nucleotide sequence