Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1336 and EX28DRAFT_1337 are separated by 138 nucleotides EX28DRAFT_1337 and EX28DRAFT_1338 are separated by 89 nucleotides EX28DRAFT_1338 and EX28DRAFT_1339 are separated by 124 nucleotides
EX28DRAFT_1336: EX28DRAFT_1336 - Transcriptional regulator, at 1,331,392 to 1,332,285
_1336
EX28DRAFT_1337: EX28DRAFT_1337 - Transcriptional regulator, at 1,332,424 to 1,333,386
_1337
EX28DRAFT_1338: EX28DRAFT_1338 - Sortase and related acyltransferases, at 1,333,476 to 1,333,952
_1338
EX28DRAFT_1339: EX28DRAFT_1339 - Uncharacterized protein conserved in bacteria, at 1,334,077 to 1,334,745
_1339
Position (kb)
1332
1333
1334 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1331.441 kb on + strand at 1331.466 kb on + strand at 1331.466 kb on + strand at 1331.467 kb on - strand at 1331.500 kb on + strand, within EX28DRAFT_1336 at 1331.501 kb on - strand, within EX28DRAFT_1336 at 1331.501 kb on - strand, within EX28DRAFT_1336 at 1331.631 kb on - strand, within EX28DRAFT_1336 at 1331.645 kb on + strand, within EX28DRAFT_1336 at 1331.788 kb on + strand, within EX28DRAFT_1336 at 1331.788 kb on + strand, within EX28DRAFT_1336 at 1331.883 kb on + strand, within EX28DRAFT_1336 at 1331.883 kb on + strand, within EX28DRAFT_1336 at 1331.884 kb on - strand, within EX28DRAFT_1336 at 1331.884 kb on - strand, within EX28DRAFT_1336 at 1331.917 kb on + strand, within EX28DRAFT_1336 at 1331.917 kb on + strand, within EX28DRAFT_1336 at 1331.998 kb on - strand, within EX28DRAFT_1336 at 1332.007 kb on - strand, within EX28DRAFT_1336 at 1332.034 kb on - strand, within EX28DRAFT_1336 at 1332.056 kb on + strand, within EX28DRAFT_1336 at 1332.056 kb on + strand, within EX28DRAFT_1336 at 1332.140 kb on - strand, within EX28DRAFT_1336 at 1332.199 kb on - strand at 1332.259 kb on + strand at 1332.339 kb on + strand at 1332.349 kb on + strand at 1332.848 kb on + strand, within EX28DRAFT_1337 at 1332.848 kb on + strand, within EX28DRAFT_1337 at 1332.848 kb on + strand, within EX28DRAFT_1337 at 1332.849 kb on - strand, within EX28DRAFT_1337 at 1332.849 kb on - strand, within EX28DRAFT_1337 at 1332.849 kb on - strand, within EX28DRAFT_1337 at 1332.849 kb on - strand, within EX28DRAFT_1337 at 1332.849 kb on - strand, within EX28DRAFT_1337 at 1333.059 kb on + strand, within EX28DRAFT_1337 at 1333.176 kb on - strand, within EX28DRAFT_1337 at 1333.225 kb on - strand, within EX28DRAFT_1337 at 1333.374 kb on + strand at 1333.428 kb on + strand at 1333.429 kb on - strand at 1333.459 kb on - strand at 1333.524 kb on + strand, within EX28DRAFT_1338 at 1333.524 kb on + strand, within EX28DRAFT_1338 at 1333.524 kb on + strand, within EX28DRAFT_1338 at 1333.525 kb on - strand, within EX28DRAFT_1338 at 1333.525 kb on - strand, within EX28DRAFT_1338 at 1333.525 kb on - strand, within EX28DRAFT_1338 at 1333.537 kb on - strand, within EX28DRAFT_1338 at 1333.661 kb on - strand, within EX28DRAFT_1338 at 1333.661 kb on - strand, within EX28DRAFT_1338 at 1333.722 kb on - strand, within EX28DRAFT_1338 at 1333.734 kb on + strand, within EX28DRAFT_1338 at 1333.787 kb on + strand, within EX28DRAFT_1338 at 1333.880 kb on - strand, within EX28DRAFT_1338 at 1334.034 kb on - strand at 1334.034 kb on - strand at 1334.039 kb on - strand at 1334.064 kb on - strand at 1334.064 kb on - strand at 1334.207 kb on - strand, within EX28DRAFT_1339 at 1334.207 kb on - strand, within EX28DRAFT_1339 at 1334.222 kb on - strand, within EX28DRAFT_1339 at 1334.234 kb on + strand, within EX28DRAFT_1339 at 1334.251 kb on + strand, within EX28DRAFT_1339 at 1334.252 kb on - strand, within EX28DRAFT_1339
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,331,441 + -0.2 1,331,466 + -2.0 1,331,466 + -1.1 1,331,467 - -0.4 1,331,500 + EX28DRAFT_1336 0.12 +0.1 1,331,501 - EX28DRAFT_1336 0.12 +0.6 1,331,501 - EX28DRAFT_1336 0.12 +1.7 1,331,631 - EX28DRAFT_1336 0.27 +0.0 1,331,645 + EX28DRAFT_1336 0.28 -2.5 1,331,788 + EX28DRAFT_1336 0.44 -1.5 1,331,788 + EX28DRAFT_1336 0.44 +0.9 1,331,883 + EX28DRAFT_1336 0.55 +0.7 1,331,883 + EX28DRAFT_1336 0.55 -0.0 1,331,884 - EX28DRAFT_1336 0.55 +0.4 1,331,884 - EX28DRAFT_1336 0.55 -0.7 1,331,917 + EX28DRAFT_1336 0.59 +1.3 1,331,917 + EX28DRAFT_1336 0.59 -0.5 1,331,998 - EX28DRAFT_1336 0.68 +0.1 1,332,007 - EX28DRAFT_1336 0.69 -1.9 1,332,034 - EX28DRAFT_1336 0.72 +0.6 1,332,056 + EX28DRAFT_1336 0.74 -0.5 1,332,056 + EX28DRAFT_1336 0.74 +0.2 1,332,140 - EX28DRAFT_1336 0.84 +0.0 1,332,199 - +0.2 1,332,259 + +0.7 1,332,339 + -0.2 1,332,349 + +0.7 1,332,848 + EX28DRAFT_1337 0.44 +1.0 1,332,848 + EX28DRAFT_1337 0.44 +0.6 1,332,848 + EX28DRAFT_1337 0.44 +0.4 1,332,849 - EX28DRAFT_1337 0.44 +0.8 1,332,849 - EX28DRAFT_1337 0.44 +0.1 1,332,849 - EX28DRAFT_1337 0.44 -0.0 1,332,849 - EX28DRAFT_1337 0.44 +0.3 1,332,849 - EX28DRAFT_1337 0.44 +0.2 1,333,059 + EX28DRAFT_1337 0.66 -0.1 1,333,176 - EX28DRAFT_1337 0.78 -2.9 1,333,225 - EX28DRAFT_1337 0.83 -1.1 1,333,374 + -0.4 1,333,428 + -0.0 1,333,429 - -0.8 1,333,459 - -0.7 1,333,524 + EX28DRAFT_1338 0.10 -0.1 1,333,524 + EX28DRAFT_1338 0.10 -0.4 1,333,524 + EX28DRAFT_1338 0.10 +0.1 1,333,525 - EX28DRAFT_1338 0.10 -0.2 1,333,525 - EX28DRAFT_1338 0.10 -0.7 1,333,525 - EX28DRAFT_1338 0.10 -0.4 1,333,537 - EX28DRAFT_1338 0.13 -0.6 1,333,661 - EX28DRAFT_1338 0.39 -0.5 1,333,661 - EX28DRAFT_1338 0.39 -0.1 1,333,722 - EX28DRAFT_1338 0.52 +0.5 1,333,734 + EX28DRAFT_1338 0.54 +2.4 1,333,787 + EX28DRAFT_1338 0.65 -1.2 1,333,880 - EX28DRAFT_1338 0.85 +0.6 1,334,034 - -0.3 1,334,034 - -0.9 1,334,039 - -0.5 1,334,064 - -1.3 1,334,064 - -1.3 1,334,207 - EX28DRAFT_1339 0.19 +0.2 1,334,207 - EX28DRAFT_1339 0.19 +0.9 1,334,222 - EX28DRAFT_1339 0.22 +0.2 1,334,234 + EX28DRAFT_1339 0.23 +0.3 1,334,251 + EX28DRAFT_1339 0.26 -1.1 1,334,252 - EX28DRAFT_1339 0.26 -0.0
Or see this region's nucleotide sequence