Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1161 and EX28DRAFT_1162 are separated by 32 nucleotides EX28DRAFT_1162 and EX28DRAFT_1163 are separated by 117 nucleotides
EX28DRAFT_1161: EX28DRAFT_1161 - Protein of unknown function (DUF2891), at 1,181,600 to 1,182,595
_1161
EX28DRAFT_1162: EX28DRAFT_1162 - Major Facilitator Superfamily, at 1,182,628 to 1,184,043
_1162
EX28DRAFT_1163: EX28DRAFT_1163 - Transcriptional regulator, at 1,184,161 to 1,185,066
_1163
Position (kb)
1182
1183
1184
1185 Strain fitness (log2 ratio)
-2
-1
0
1 at 1181.651 kb on + strand at 1181.651 kb on + strand at 1181.667 kb on - strand at 1181.892 kb on - strand, within EX28DRAFT_1161 at 1182.054 kb on - strand, within EX28DRAFT_1161 at 1182.095 kb on + strand, within EX28DRAFT_1161 at 1182.194 kb on + strand, within EX28DRAFT_1161 at 1182.245 kb on + strand, within EX28DRAFT_1161 at 1182.245 kb on + strand, within EX28DRAFT_1161 at 1182.245 kb on + strand, within EX28DRAFT_1161 at 1182.442 kb on + strand, within EX28DRAFT_1161 at 1182.443 kb on - strand, within EX28DRAFT_1161 at 1182.448 kb on + strand, within EX28DRAFT_1161 at 1182.545 kb on + strand at 1182.546 kb on - strand at 1182.775 kb on + strand, within EX28DRAFT_1162 at 1182.842 kb on + strand, within EX28DRAFT_1162 at 1182.842 kb on + strand, within EX28DRAFT_1162 at 1182.943 kb on - strand, within EX28DRAFT_1162 at 1183.133 kb on + strand, within EX28DRAFT_1162 at 1183.133 kb on + strand, within EX28DRAFT_1162 at 1183.284 kb on + strand, within EX28DRAFT_1162 at 1183.377 kb on + strand, within EX28DRAFT_1162 at 1183.544 kb on - strand, within EX28DRAFT_1162 at 1183.698 kb on + strand, within EX28DRAFT_1162 at 1183.759 kb on - strand, within EX28DRAFT_1162 at 1184.035 kb on + strand at 1184.059 kb on + strand at 1184.065 kb on + strand at 1184.066 kb on - strand at 1184.066 kb on - strand at 1184.080 kb on + strand at 1184.082 kb on + strand at 1184.083 kb on - strand at 1184.138 kb on - strand at 1184.145 kb on + strand at 1184.146 kb on - strand at 1184.179 kb on - strand at 1184.307 kb on + strand, within EX28DRAFT_1163 at 1184.332 kb on - strand, within EX28DRAFT_1163 at 1184.502 kb on + strand, within EX28DRAFT_1163 at 1184.503 kb on - strand, within EX28DRAFT_1163 at 1184.534 kb on + strand, within EX28DRAFT_1163 at 1184.535 kb on - strand, within EX28DRAFT_1163 at 1184.535 kb on - strand, within EX28DRAFT_1163 at 1184.535 kb on - strand, within EX28DRAFT_1163 at 1184.728 kb on + strand, within EX28DRAFT_1163 at 1184.933 kb on + strand, within EX28DRAFT_1163
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,181,651 + +0.9 1,181,651 + +0.1 1,181,667 - +0.3 1,181,892 - EX28DRAFT_1161 0.29 +0.5 1,182,054 - EX28DRAFT_1161 0.46 +1.1 1,182,095 + EX28DRAFT_1161 0.50 -0.5 1,182,194 + EX28DRAFT_1161 0.60 -0.6 1,182,245 + EX28DRAFT_1161 0.65 +1.2 1,182,245 + EX28DRAFT_1161 0.65 +0.4 1,182,245 + EX28DRAFT_1161 0.65 +0.4 1,182,442 + EX28DRAFT_1161 0.85 -0.1 1,182,443 - EX28DRAFT_1161 0.85 -2.6 1,182,448 + EX28DRAFT_1161 0.85 -1.5 1,182,545 + -0.6 1,182,546 - +0.3 1,182,775 + EX28DRAFT_1162 0.10 -0.2 1,182,842 + EX28DRAFT_1162 0.15 -1.3 1,182,842 + EX28DRAFT_1162 0.15 +0.8 1,182,943 - EX28DRAFT_1162 0.22 -0.0 1,183,133 + EX28DRAFT_1162 0.36 +0.2 1,183,133 + EX28DRAFT_1162 0.36 +0.2 1,183,284 + EX28DRAFT_1162 0.46 -0.1 1,183,377 + EX28DRAFT_1162 0.53 +0.3 1,183,544 - EX28DRAFT_1162 0.65 -2.3 1,183,698 + EX28DRAFT_1162 0.76 +0.6 1,183,759 - EX28DRAFT_1162 0.80 +0.6 1,184,035 + +0.0 1,184,059 + -0.7 1,184,065 + -0.1 1,184,066 - -0.3 1,184,066 - +0.2 1,184,080 + +0.1 1,184,082 + -0.3 1,184,083 - +0.0 1,184,138 - +0.3 1,184,145 + -1.1 1,184,146 - -0.8 1,184,179 - +0.2 1,184,307 + EX28DRAFT_1163 0.16 +0.8 1,184,332 - EX28DRAFT_1163 0.19 -0.5 1,184,502 + EX28DRAFT_1163 0.38 +0.4 1,184,503 - EX28DRAFT_1163 0.38 -1.9 1,184,534 + EX28DRAFT_1163 0.41 +1.1 1,184,535 - EX28DRAFT_1163 0.41 +0.2 1,184,535 - EX28DRAFT_1163 0.41 -0.7 1,184,535 - EX28DRAFT_1163 0.41 -2.2 1,184,728 + EX28DRAFT_1163 0.63 -0.1 1,184,933 + EX28DRAFT_1163 0.85 -0.4
Or see this region's nucleotide sequence