Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1137 and EX28DRAFT_1138 overlap by 11 nucleotides EX28DRAFT_1138 and EX28DRAFT_1139 are separated by 11 nucleotides EX28DRAFT_1139 and EX28DRAFT_1140 overlap by 4 nucleotides
EX28DRAFT_1137: EX28DRAFT_1137 - Beta-galactosidase/beta-glucuronidase, at 1,151,024 to 1,153,195
_1137
EX28DRAFT_1138: EX28DRAFT_1138 - Signal transduction histidine kinase, at 1,153,185 to 1,155,863
_1138
EX28DRAFT_1139: EX28DRAFT_1139 - hypothetical protein, at 1,155,875 to 1,156,300
_1139
EX28DRAFT_1140: EX28DRAFT_1140 - Protein of unknown function (DUF3131), at 1,156,297 to 1,157,691
_1140
Position (kb)
1153
1154
1155
1156 Strain fitness (log2 ratio)
-1
0
1 at 1152.223 kb on - strand, within EX28DRAFT_1137 at 1152.365 kb on - strand, within EX28DRAFT_1137 at 1152.366 kb on + strand, within EX28DRAFT_1137 at 1152.367 kb on - strand, within EX28DRAFT_1137 at 1152.367 kb on - strand, within EX28DRAFT_1137 at 1152.868 kb on - strand, within EX28DRAFT_1137 at 1152.918 kb on + strand, within EX28DRAFT_1137 at 1152.988 kb on + strand at 1152.989 kb on - strand at 1152.989 kb on - strand at 1152.989 kb on - strand at 1152.991 kb on - strand at 1153.186 kb on + strand at 1153.253 kb on - strand at 1153.253 kb on - strand at 1153.295 kb on + strand at 1153.295 kb on + strand at 1153.352 kb on + strand at 1153.353 kb on - strand at 1153.479 kb on + strand, within EX28DRAFT_1138 at 1153.510 kb on - strand, within EX28DRAFT_1138 at 1153.519 kb on - strand, within EX28DRAFT_1138 at 1153.613 kb on - strand, within EX28DRAFT_1138 at 1153.632 kb on - strand, within EX28DRAFT_1138 at 1153.789 kb on - strand, within EX28DRAFT_1138 at 1154.027 kb on + strand, within EX28DRAFT_1138 at 1154.028 kb on - strand, within EX28DRAFT_1138 at 1154.385 kb on - strand, within EX28DRAFT_1138 at 1154.763 kb on - strand, within EX28DRAFT_1138 at 1155.112 kb on - strand, within EX28DRAFT_1138 at 1155.134 kb on + strand, within EX28DRAFT_1138 at 1155.134 kb on + strand, within EX28DRAFT_1138 at 1155.138 kb on - strand, within EX28DRAFT_1138 at 1155.449 kb on + strand, within EX28DRAFT_1138 at 1155.528 kb on - strand, within EX28DRAFT_1138 at 1155.528 kb on - strand, within EX28DRAFT_1138 at 1155.811 kb on + strand at 1155.812 kb on - strand at 1155.912 kb on + strand at 1155.912 kb on + strand at 1155.913 kb on - strand at 1156.089 kb on - strand, within EX28DRAFT_1139 at 1156.199 kb on - strand, within EX28DRAFT_1139 at 1156.215 kb on + strand, within EX28DRAFT_1139 at 1156.216 kb on - strand, within EX28DRAFT_1139 at 1156.216 kb on - strand, within EX28DRAFT_1139 at 1156.312 kb on + strand at 1156.352 kb on + strand at 1156.352 kb on + strand at 1156.353 kb on - strand at 1156.353 kb on - strand at 1156.364 kb on - strand at 1156.379 kb on + strand at 1156.379 kb on + strand at 1156.704 kb on + strand, within EX28DRAFT_1140 at 1156.705 kb on - strand, within EX28DRAFT_1140
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,152,223 - EX28DRAFT_1137 0.55 +0.5 1,152,365 - EX28DRAFT_1137 0.62 -0.4 1,152,366 + EX28DRAFT_1137 0.62 -0.6 1,152,367 - EX28DRAFT_1137 0.62 +1.0 1,152,367 - EX28DRAFT_1137 0.62 +0.3 1,152,868 - EX28DRAFT_1137 0.85 +0.7 1,152,918 + EX28DRAFT_1137 0.87 -0.2 1,152,988 + -0.2 1,152,989 - -1.7 1,152,989 - +0.6 1,152,989 - -0.1 1,152,991 - -0.2 1,153,186 + +0.1 1,153,253 - -0.6 1,153,253 - +0.2 1,153,295 + +0.0 1,153,295 + +0.5 1,153,352 + -0.1 1,153,353 - +0.9 1,153,479 + EX28DRAFT_1138 0.11 -0.3 1,153,510 - EX28DRAFT_1138 0.12 -0.3 1,153,519 - EX28DRAFT_1138 0.12 +0.2 1,153,613 - EX28DRAFT_1138 0.16 +1.0 1,153,632 - EX28DRAFT_1138 0.17 -0.4 1,153,789 - EX28DRAFT_1138 0.23 +0.7 1,154,027 + EX28DRAFT_1138 0.31 +0.1 1,154,028 - EX28DRAFT_1138 0.31 -0.1 1,154,385 - EX28DRAFT_1138 0.45 -0.2 1,154,763 - EX28DRAFT_1138 0.59 +1.1 1,155,112 - EX28DRAFT_1138 0.72 +0.5 1,155,134 + EX28DRAFT_1138 0.73 +0.4 1,155,134 + EX28DRAFT_1138 0.73 -0.1 1,155,138 - EX28DRAFT_1138 0.73 +0.3 1,155,449 + EX28DRAFT_1138 0.85 -0.4 1,155,528 - EX28DRAFT_1138 0.87 +0.5 1,155,528 - EX28DRAFT_1138 0.87 +0.2 1,155,811 + -0.1 1,155,812 - -0.6 1,155,912 + +0.1 1,155,912 + -0.3 1,155,913 - -0.1 1,156,089 - EX28DRAFT_1139 0.50 +0.3 1,156,199 - EX28DRAFT_1139 0.76 +0.7 1,156,215 + EX28DRAFT_1139 0.80 +0.2 1,156,216 - EX28DRAFT_1139 0.80 +0.6 1,156,216 - EX28DRAFT_1139 0.80 +0.6 1,156,312 + -0.0 1,156,352 + +0.2 1,156,352 + +0.0 1,156,353 - -0.5 1,156,353 - -1.4 1,156,364 - +0.9 1,156,379 + +0.8 1,156,379 + -0.5 1,156,704 + EX28DRAFT_1140 0.29 -0.1 1,156,705 - EX28DRAFT_1140 0.29 +0.1
Or see this region's nucleotide sequence