Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1135 and EX28DRAFT_1136 are separated by 7 nucleotides EX28DRAFT_1136 and EX28DRAFT_1137 are separated by 93 nucleotides EX28DRAFT_1137 and EX28DRAFT_1138 overlap by 11 nucleotides
EX28DRAFT_1135: EX28DRAFT_1135 - Uncharacterized protein conserved in bacteria, at 1,149,343 to 1,150,635
_1135
EX28DRAFT_1136: EX28DRAFT_1136 - Uncharacterized conserved protein (DUF2132), at 1,150,643 to 1,150,930
_1136
EX28DRAFT_1137: EX28DRAFT_1137 - Beta-galactosidase/beta-glucuronidase, at 1,151,024 to 1,153,195
_1137
EX28DRAFT_1138: EX28DRAFT_1138 - Signal transduction histidine kinase, at 1,153,185 to 1,155,863
_1138
Position (kb)
1151
1152
1153
1154 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1150.097 kb on + strand, within EX28DRAFT_1135 at 1150.097 kb on + strand, within EX28DRAFT_1135 at 1150.098 kb on - strand, within EX28DRAFT_1135 at 1150.230 kb on + strand, within EX28DRAFT_1135 at 1150.231 kb on - strand, within EX28DRAFT_1135 at 1150.353 kb on + strand, within EX28DRAFT_1135 at 1150.354 kb on - strand, within EX28DRAFT_1135 at 1150.585 kb on + strand at 1150.586 kb on - strand at 1150.621 kb on + strand at 1150.621 kb on + strand at 1150.732 kb on - strand, within EX28DRAFT_1136 at 1150.820 kb on - strand, within EX28DRAFT_1136 at 1150.854 kb on + strand, within EX28DRAFT_1136 at 1150.855 kb on - strand, within EX28DRAFT_1136 at 1150.855 kb on - strand, within EX28DRAFT_1136 at 1150.919 kb on - strand at 1150.930 kb on + strand at 1150.930 kb on + strand at 1150.930 kb on + strand at 1150.931 kb on - strand at 1151.089 kb on + strand at 1151.362 kb on - strand, within EX28DRAFT_1137 at 1151.478 kb on + strand, within EX28DRAFT_1137 at 1151.514 kb on + strand, within EX28DRAFT_1137 at 1151.528 kb on - strand, within EX28DRAFT_1137 at 1151.575 kb on + strand, within EX28DRAFT_1137 at 1151.575 kb on + strand, within EX28DRAFT_1137 at 1151.599 kb on + strand, within EX28DRAFT_1137 at 1151.605 kb on - strand, within EX28DRAFT_1137 at 1151.759 kb on + strand, within EX28DRAFT_1137 at 1151.760 kb on - strand, within EX28DRAFT_1137 at 1151.788 kb on - strand, within EX28DRAFT_1137 at 1151.830 kb on + strand, within EX28DRAFT_1137 at 1152.223 kb on - strand, within EX28DRAFT_1137 at 1152.365 kb on - strand, within EX28DRAFT_1137 at 1152.366 kb on + strand, within EX28DRAFT_1137 at 1152.367 kb on - strand, within EX28DRAFT_1137 at 1152.367 kb on - strand, within EX28DRAFT_1137 at 1152.868 kb on - strand, within EX28DRAFT_1137 at 1152.918 kb on + strand, within EX28DRAFT_1137 at 1152.988 kb on + strand at 1152.989 kb on - strand at 1152.989 kb on - strand at 1152.989 kb on - strand at 1152.991 kb on - strand at 1153.186 kb on + strand at 1153.253 kb on - strand at 1153.253 kb on - strand at 1153.295 kb on + strand at 1153.295 kb on + strand at 1153.352 kb on + strand at 1153.353 kb on - strand at 1153.479 kb on + strand, within EX28DRAFT_1138 at 1153.510 kb on - strand, within EX28DRAFT_1138 at 1153.519 kb on - strand, within EX28DRAFT_1138 at 1153.613 kb on - strand, within EX28DRAFT_1138 at 1153.632 kb on - strand, within EX28DRAFT_1138 at 1153.789 kb on - strand, within EX28DRAFT_1138 at 1154.027 kb on + strand, within EX28DRAFT_1138 at 1154.028 kb on - strand, within EX28DRAFT_1138
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,150,097 + EX28DRAFT_1135 0.58 +0.8 1,150,097 + EX28DRAFT_1135 0.58 -0.1 1,150,098 - EX28DRAFT_1135 0.58 -0.8 1,150,230 + EX28DRAFT_1135 0.69 +0.1 1,150,231 - EX28DRAFT_1135 0.69 +0.4 1,150,353 + EX28DRAFT_1135 0.78 -0.4 1,150,354 - EX28DRAFT_1135 0.78 -0.5 1,150,585 + -2.3 1,150,586 - -1.0 1,150,621 + -0.6 1,150,621 + +0.5 1,150,732 - EX28DRAFT_1136 0.31 -0.7 1,150,820 - EX28DRAFT_1136 0.61 -0.2 1,150,854 + EX28DRAFT_1136 0.73 -1.0 1,150,855 - EX28DRAFT_1136 0.74 -0.8 1,150,855 - EX28DRAFT_1136 0.74 +0.1 1,150,919 - -0.1 1,150,930 + +1.4 1,150,930 + +1.0 1,150,930 + -0.2 1,150,931 - +0.5 1,151,089 + +0.6 1,151,362 - EX28DRAFT_1137 0.16 +0.1 1,151,478 + EX28DRAFT_1137 0.21 +0.5 1,151,514 + EX28DRAFT_1137 0.23 +0.2 1,151,528 - EX28DRAFT_1137 0.23 -2.0 1,151,575 + EX28DRAFT_1137 0.25 +0.8 1,151,575 + EX28DRAFT_1137 0.25 -1.3 1,151,599 + EX28DRAFT_1137 0.26 +0.2 1,151,605 - EX28DRAFT_1137 0.27 +0.2 1,151,759 + EX28DRAFT_1137 0.34 +1.0 1,151,760 - EX28DRAFT_1137 0.34 -0.8 1,151,788 - EX28DRAFT_1137 0.35 +2.0 1,151,830 + EX28DRAFT_1137 0.37 +1.9 1,152,223 - EX28DRAFT_1137 0.55 +0.5 1,152,365 - EX28DRAFT_1137 0.62 -0.4 1,152,366 + EX28DRAFT_1137 0.62 -0.6 1,152,367 - EX28DRAFT_1137 0.62 +1.0 1,152,367 - EX28DRAFT_1137 0.62 +0.3 1,152,868 - EX28DRAFT_1137 0.85 +0.7 1,152,918 + EX28DRAFT_1137 0.87 -0.2 1,152,988 + -0.2 1,152,989 - -1.7 1,152,989 - +0.6 1,152,989 - -0.1 1,152,991 - -0.2 1,153,186 + +0.1 1,153,253 - -0.6 1,153,253 - +0.2 1,153,295 + +0.0 1,153,295 + +0.5 1,153,352 + -0.1 1,153,353 - +0.9 1,153,479 + EX28DRAFT_1138 0.11 -0.3 1,153,510 - EX28DRAFT_1138 0.12 -0.3 1,153,519 - EX28DRAFT_1138 0.12 +0.2 1,153,613 - EX28DRAFT_1138 0.16 +1.0 1,153,632 - EX28DRAFT_1138 0.17 -0.4 1,153,789 - EX28DRAFT_1138 0.23 +0.7 1,154,027 + EX28DRAFT_1138 0.31 +0.1 1,154,028 - EX28DRAFT_1138 0.31 -0.1
Or see this region's nucleotide sequence