Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1068

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1066 and EX28DRAFT_1067 are separated by 35 nucleotidesEX28DRAFT_1067 and EX28DRAFT_1068 are separated by 108 nucleotidesEX28DRAFT_1068 and EX28DRAFT_1069 are separated by 68 nucleotidesEX28DRAFT_1069 and EX28DRAFT_1070 are separated by 116 nucleotides EX28DRAFT_1066: EX28DRAFT_1066 - translation elongation factor EF-G, at 1,076,956 to 1,079,055 _1066 EX28DRAFT_1067: EX28DRAFT_1067 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 1,079,091 to 1,079,663 _1067 EX28DRAFT_1068: EX28DRAFT_1068 - Arylamine N-acetyltransferase, at 1,079,772 to 1,080,617 _1068 EX28DRAFT_1069: EX28DRAFT_1069 - transcriptional regulator, TetR family, at 1,080,686 to 1,081,279 _1069 EX28DRAFT_1070: EX28DRAFT_1070 - Arabinose efflux permease, at 1,081,396 to 1,082,883 _1070 Position (kb) 1079 1080 1081Strain fitness (log2 ratio) -2 -1 0 1 2at 1078.797 kb on - strand, within EX28DRAFT_1066at 1078.833 kb on + strand, within EX28DRAFT_1066at 1078.937 kb on - strandat 1078.978 kb on + strandat 1078.979 kb on - strandat 1078.979 kb on - strandat 1078.981 kb on - strandat 1078.981 kb on - strandat 1079.034 kb on + strandat 1079.053 kb on + strandat 1079.056 kb on + strandat 1079.157 kb on - strand, within EX28DRAFT_1067at 1079.407 kb on + strand, within EX28DRAFT_1067at 1079.407 kb on + strand, within EX28DRAFT_1067at 1079.637 kb on + strandat 1079.638 kb on - strandat 1079.638 kb on - strandat 1079.663 kb on + strandat 1079.678 kb on + strandat 1079.690 kb on + strandat 1079.707 kb on + strandat 1079.736 kb on + strandat 1079.739 kb on - strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.860 kb on + strand, within EX28DRAFT_1068at 1079.860 kb on + strand, within EX28DRAFT_1068at 1079.860 kb on + strand, within EX28DRAFT_1068at 1079.861 kb on - strand, within EX28DRAFT_1068at 1079.861 kb on - strand, within EX28DRAFT_1068at 1079.891 kb on + strand, within EX28DRAFT_1068at 1079.891 kb on + strand, within EX28DRAFT_1068at 1079.892 kb on - strand, within EX28DRAFT_1068at 1079.974 kb on - strand, within EX28DRAFT_1068at 1080.216 kb on + strand, within EX28DRAFT_1068at 1080.309 kb on + strand, within EX28DRAFT_1068at 1080.309 kb on + strand, within EX28DRAFT_1068at 1080.461 kb on - strand, within EX28DRAFT_1068at 1080.461 kb on - strand, within EX28DRAFT_1068at 1080.461 kb on - strand, within EX28DRAFT_1068at 1080.461 kb on - strand, within EX28DRAFT_1068at 1080.496 kb on + strand, within EX28DRAFT_1068at 1080.497 kb on - strand, within EX28DRAFT_1068at 1080.499 kb on - strand, within EX28DRAFT_1068at 1080.499 kb on - strand, within EX28DRAFT_1068at 1080.499 kb on - strand, within EX28DRAFT_1068at 1080.505 kb on + strand, within EX28DRAFT_1068at 1080.651 kb on + strandat 1080.652 kb on - strandat 1080.652 kb on - strandat 1080.776 kb on + strand, within EX28DRAFT_1069at 1080.783 kb on + strand, within EX28DRAFT_1069at 1080.784 kb on - strand, within EX28DRAFT_1069at 1080.784 kb on - strand, within EX28DRAFT_1069at 1080.784 kb on - strand, within EX28DRAFT_1069at 1080.784 kb on - strand, within EX28DRAFT_1069at 1080.784 kb on - strand, within EX28DRAFT_1069at 1080.813 kb on - strand, within EX28DRAFT_1069at 1080.917 kb on - strand, within EX28DRAFT_1069at 1080.991 kb on - strand, within EX28DRAFT_1069at 1081.098 kb on - strand, within EX28DRAFT_1069at 1081.133 kb on - strand, within EX28DRAFT_1069at 1081.238 kb on + strandat 1081.238 kb on + strandat 1081.331 kb on - strandat 1081.331 kb on - strandat 1081.331 kb on - strandat 1081.438 kb on + strandat 1081.438 kb on + strandat 1081.438 kb on + strandat 1081.438 kb on + strandat 1081.438 kb on + strandat 1081.439 kb on - strandat 1081.439 kb on - strandat 1081.439 kb on - strandat 1081.439 kb on - strandat 1081.539 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,078,797 - EX28DRAFT_1066 0.88 -0.0
1,078,833 + EX28DRAFT_1066 0.89 -0.0
1,078,937 - -0.2
1,078,978 + +0.9
1,078,979 - +0.3
1,078,979 - +0.3
1,078,981 - -1.0
1,078,981 - +0.0
1,079,034 + +0.1
1,079,053 + +0.1
1,079,056 + -0.4
1,079,157 - EX28DRAFT_1067 0.12 -1.6
1,079,407 + EX28DRAFT_1067 0.55 -0.2
1,079,407 + EX28DRAFT_1067 0.55 -0.4
1,079,637 + -0.2
1,079,638 - +0.5
1,079,638 - +0.6
1,079,663 + -1.4
1,079,678 + -0.6
1,079,690 + +1.1
1,079,707 + +0.4
1,079,736 + -1.0
1,079,739 - +0.3
1,079,771 + -0.3
1,079,771 + -1.8
1,079,771 + -0.6
1,079,771 + +0.0
1,079,771 + -1.1
1,079,771 + -0.2
1,079,771 + -1.7
1,079,771 + +1.0
1,079,772 - +0.5
1,079,772 - -1.1
1,079,772 - -1.0
1,079,772 - -0.1
1,079,860 + EX28DRAFT_1068 0.10 -0.3
1,079,860 + EX28DRAFT_1068 0.10 -0.6
1,079,860 + EX28DRAFT_1068 0.10 -0.3
1,079,861 - EX28DRAFT_1068 0.11 +0.4
1,079,861 - EX28DRAFT_1068 0.11 +1.3
1,079,891 + EX28DRAFT_1068 0.14 -0.7
1,079,891 + EX28DRAFT_1068 0.14 +0.8
1,079,892 - EX28DRAFT_1068 0.14 -1.3
1,079,974 - EX28DRAFT_1068 0.24 -0.2
1,080,216 + EX28DRAFT_1068 0.52 -0.2
1,080,309 + EX28DRAFT_1068 0.63 +0.7
1,080,309 + EX28DRAFT_1068 0.63 -2.0
1,080,461 - EX28DRAFT_1068 0.81 -1.1
1,080,461 - EX28DRAFT_1068 0.81 -0.3
1,080,461 - EX28DRAFT_1068 0.81 +0.8
1,080,461 - EX28DRAFT_1068 0.81 -0.7
1,080,496 + EX28DRAFT_1068 0.86 -1.1
1,080,497 - EX28DRAFT_1068 0.86 -0.6
1,080,499 - EX28DRAFT_1068 0.86 +0.2
1,080,499 - EX28DRAFT_1068 0.86 -0.1
1,080,499 - EX28DRAFT_1068 0.86 +0.6
1,080,505 + EX28DRAFT_1068 0.87 +0.2
1,080,651 + -0.3
1,080,652 - -0.2
1,080,652 - -2.3
1,080,776 + EX28DRAFT_1069 0.15 +0.1
1,080,783 + EX28DRAFT_1069 0.16 -0.8
1,080,784 - EX28DRAFT_1069 0.16 -1.6
1,080,784 - EX28DRAFT_1069 0.16 -0.2
1,080,784 - EX28DRAFT_1069 0.16 -0.1
1,080,784 - EX28DRAFT_1069 0.16 -0.9
1,080,784 - EX28DRAFT_1069 0.16 +0.0
1,080,813 - EX28DRAFT_1069 0.21 -0.4
1,080,917 - EX28DRAFT_1069 0.39 -1.7
1,080,991 - EX28DRAFT_1069 0.51 +0.6
1,081,098 - EX28DRAFT_1069 0.69 +0.2
1,081,133 - EX28DRAFT_1069 0.75 -0.8
1,081,238 + -0.1
1,081,238 + -0.2
1,081,331 - +0.1
1,081,331 - +0.0
1,081,331 - -0.2
1,081,438 + -1.2
1,081,438 + +0.3
1,081,438 + +0.3
1,081,438 + -0.1
1,081,438 + +1.0
1,081,439 - +0.9
1,081,439 - -0.1
1,081,439 - +1.8
1,081,439 - -0.8
1,081,539 + -0.3

Or see this region's nucleotide sequence