Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0957

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0954 and EX28DRAFT_0955 overlap by 1 nucleotidesEX28DRAFT_0955 and EX28DRAFT_0956 are separated by 105 nucleotidesEX28DRAFT_0956 and EX28DRAFT_0957 are separated by 263 nucleotidesEX28DRAFT_0957 and EX28DRAFT_0958 are separated by 37 nucleotidesEX28DRAFT_0958 and EX28DRAFT_0959 are separated by 166 nucleotides EX28DRAFT_0954: EX28DRAFT_0954 - orotidine-5'-phosphate decarboxylase (EC 4.1.1.23), at 954,228 to 954,965 _0954 EX28DRAFT_0955: EX28DRAFT_0955 - translation initation factor SUI1, putative, prokaryotic, at 954,965 to 955,291 _0955 EX28DRAFT_0956: EX28DRAFT_0956 - Glycine zipper 2TM domain, at 955,397 to 955,615 _0956 EX28DRAFT_0957: EX28DRAFT_0957 - transcriptional regulator, DeoR family, at 955,879 to 956,631 _0957 EX28DRAFT_0958: EX28DRAFT_0958 - hypothetical protein, at 956,669 to 956,884 _0958 EX28DRAFT_0959: EX28DRAFT_0959 - Enoyl-CoA hydratase/carnithine racemase, at 957,051 to 957,920 _0959 Position (kb) 955 956 957Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 954.992 kb on + strandat 954.992 kb on + strandat 955.012 kb on + strand, within EX28DRAFT_0955at 955.264 kb on + strandat 955.328 kb on - strandat 955.329 kb on + strandat 955.329 kb on + strandat 955.329 kb on + strandat 955.330 kb on - strandat 955.331 kb on + strandat 955.332 kb on - strandat 955.332 kb on - strandat 955.332 kb on - strandat 955.332 kb on - strandat 955.332 kb on - strandat 955.340 kb on - strandat 955.340 kb on - strandat 955.424 kb on - strand, within EX28DRAFT_0956at 955.445 kb on + strand, within EX28DRAFT_0956at 955.445 kb on + strand, within EX28DRAFT_0956at 955.462 kb on + strand, within EX28DRAFT_0956at 955.475 kb on + strand, within EX28DRAFT_0956at 955.510 kb on + strand, within EX28DRAFT_0956at 955.532 kb on - strand, within EX28DRAFT_0956at 955.566 kb on - strand, within EX28DRAFT_0956at 955.607 kb on + strandat 955.616 kb on - strandat 955.619 kb on - strandat 955.619 kb on - strandat 955.619 kb on - strandat 955.653 kb on + strandat 955.653 kb on + strandat 955.654 kb on - strandat 955.654 kb on - strandat 955.660 kb on + strandat 955.660 kb on + strandat 955.661 kb on - strandat 955.680 kb on - strandat 955.683 kb on + strandat 955.810 kb on - strandat 955.818 kb on - strandat 955.818 kb on - strandat 955.849 kb on - strandat 955.894 kb on - strandat 955.897 kb on - strandat 955.897 kb on - strandat 955.899 kb on + strandat 955.999 kb on - strand, within EX28DRAFT_0957at 956.194 kb on + strand, within EX28DRAFT_0957at 956.276 kb on + strand, within EX28DRAFT_0957at 956.276 kb on + strand, within EX28DRAFT_0957at 956.276 kb on + strand, within EX28DRAFT_0957at 956.276 kb on + strand, within EX28DRAFT_0957at 956.276 kb on + strand, within EX28DRAFT_0957at 956.341 kb on - strand, within EX28DRAFT_0957at 956.424 kb on - strand, within EX28DRAFT_0957at 956.496 kb on - strand, within EX28DRAFT_0957at 956.559 kb on + strandat 956.631 kb on + strandat 956.631 kb on + strandat 956.632 kb on - strandat 956.632 kb on - strandat 956.642 kb on + strandat 956.940 kb on + strandat 956.955 kb on + strandat 956.956 kb on - strandat 957.050 kb on + strandat 957.051 kb on - strandat 957.051 kb on - strandat 957.060 kb on - strandat 957.071 kb on + strandat 957.123 kb on + strandat 957.194 kb on - strand, within EX28DRAFT_0959at 957.194 kb on - strand, within EX28DRAFT_0959at 957.196 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.286 kb on - strand, within EX28DRAFT_0959at 957.304 kb on + strand, within EX28DRAFT_0959at 957.558 kb on + strand, within EX28DRAFT_0959at 957.609 kb on + strand, within EX28DRAFT_0959at 957.609 kb on + strand, within EX28DRAFT_0959at 957.610 kb on - strand, within EX28DRAFT_0959at 957.610 kb on - strand, within EX28DRAFT_0959at 957.610 kb on - strand, within EX28DRAFT_0959

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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954,992 + +0.4
954,992 + -0.8
955,012 + EX28DRAFT_0955 0.14 -2.6
955,264 + -0.7
955,328 - -1.6
955,329 + -0.4
955,329 + +0.8
955,329 + +0.1
955,330 - -0.7
955,331 + +0.5
955,332 - -1.3
955,332 - +0.4
955,332 - -0.2
955,332 - +0.1
955,332 - +0.7
955,340 - +1.3
955,340 - -0.1
955,424 - EX28DRAFT_0956 0.12 -0.7
955,445 + EX28DRAFT_0956 0.22 +2.3
955,445 + EX28DRAFT_0956 0.22 +0.3
955,462 + EX28DRAFT_0956 0.30 +0.5
955,475 + EX28DRAFT_0956 0.36 +1.0
955,510 + EX28DRAFT_0956 0.52 +0.4
955,532 - EX28DRAFT_0956 0.62 +0.2
955,566 - EX28DRAFT_0956 0.77 -0.3
955,607 + +1.5
955,616 - +0.6
955,619 - +0.8
955,619 - -0.2
955,619 - -0.5
955,653 + -0.3
955,653 + -0.2
955,654 - -1.9
955,654 - +0.3
955,660 + +0.0
955,660 + -2.1
955,661 - -0.7
955,680 - -0.5
955,683 + -0.2
955,810 - +0.6
955,818 - +0.0
955,818 - -1.4
955,849 - +0.8
955,894 - +0.2
955,897 - -0.1
955,897 - -1.8
955,899 + -0.8
955,999 - EX28DRAFT_0957 0.16 -1.8
956,194 + EX28DRAFT_0957 0.42 -2.7
956,276 + EX28DRAFT_0957 0.53 -0.7
956,276 + EX28DRAFT_0957 0.53 -0.1
956,276 + EX28DRAFT_0957 0.53 -0.6
956,276 + EX28DRAFT_0957 0.53 +0.0
956,276 + EX28DRAFT_0957 0.53 -0.1
956,341 - EX28DRAFT_0957 0.61 -0.9
956,424 - EX28DRAFT_0957 0.72 +0.1
956,496 - EX28DRAFT_0957 0.82 -0.3
956,559 + -0.2
956,631 + +1.1
956,631 + +0.4
956,632 - -0.5
956,632 - -0.8
956,642 + -0.2
956,940 + +0.1
956,955 + -0.2
956,956 - -0.3
957,050 + +0.7
957,051 - +0.6
957,051 - -0.4
957,060 - -0.3
957,071 + -0.7
957,123 + -2.9
957,194 - EX28DRAFT_0959 0.16 -0.3
957,194 - EX28DRAFT_0959 0.16 +0.2
957,196 + EX28DRAFT_0959 0.17 +0.0
957,285 + EX28DRAFT_0959 0.27 +0.8
957,285 + EX28DRAFT_0959 0.27 +0.1
957,285 + EX28DRAFT_0959 0.27 +0.1
957,285 + EX28DRAFT_0959 0.27 -0.6
957,286 - EX28DRAFT_0959 0.27 -0.4
957,304 + EX28DRAFT_0959 0.29 +1.2
957,558 + EX28DRAFT_0959 0.58 +0.2
957,609 + EX28DRAFT_0959 0.64 +0.3
957,609 + EX28DRAFT_0959 0.64 +0.1
957,610 - EX28DRAFT_0959 0.64 -0.8
957,610 - EX28DRAFT_0959 0.64 +2.2
957,610 - EX28DRAFT_0959 0.64 -0.6

Or see this region's nucleotide sequence