Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0854

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0852 and EX28DRAFT_0853 overlap by 4 nucleotidesEX28DRAFT_0853 and EX28DRAFT_0854 overlap by 1 nucleotidesEX28DRAFT_0854 and EX28DRAFT_0855 overlap by 4 nucleotides EX28DRAFT_0852: EX28DRAFT_0852 - respiratory nitrate reductase beta subunit, at 864,543 to 866,078 _0852 EX28DRAFT_0853: EX28DRAFT_0853 - respiratory nitrate reductase chaperone NarJ, at 866,075 to 866,785 _0853 EX28DRAFT_0854: EX28DRAFT_0854 - respiratory nitrate reductase, gamma subunit, at 866,785 to 867,462 _0854 EX28DRAFT_0855: EX28DRAFT_0855 - Predicted permease, DMT superfamily, at 867,459 to 868,355 _0855 Position (kb) 866 867 868Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.869 kb on + strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.870 kb on - strand, within EX28DRAFT_0852at 865.893 kb on + strand, within EX28DRAFT_0852at 865.893 kb on + strand, within EX28DRAFT_0852at 865.974 kb on - strandat 866.227 kb on - strand, within EX28DRAFT_0853at 866.799 kb on + strandat 866.799 kb on + strandat 866.800 kb on - strandat 866.825 kb on - strandat 867.013 kb on + strand, within EX28DRAFT_0854at 867.013 kb on + strand, within EX28DRAFT_0854at 867.013 kb on + strand, within EX28DRAFT_0854at 867.014 kb on - strand, within EX28DRAFT_0854at 867.014 kb on - strand, within EX28DRAFT_0854at 867.234 kb on + strand, within EX28DRAFT_0854at 867.235 kb on - strand, within EX28DRAFT_0854at 867.399 kb on + strandat 867.400 kb on - strandat 867.400 kb on - strandat 867.421 kb on + strandat 867.629 kb on + strand, within EX28DRAFT_0855at 867.630 kb on - strand, within EX28DRAFT_0855at 867.630 kb on - strand, within EX28DRAFT_0855at 867.680 kb on - strand, within EX28DRAFT_0855at 867.692 kb on - strand, within EX28DRAFT_0855at 867.692 kb on - strand, within EX28DRAFT_0855at 867.696 kb on - strand, within EX28DRAFT_0855at 867.705 kb on - strand, within EX28DRAFT_0855at 867.778 kb on - strand, within EX28DRAFT_0855at 867.818 kb on + strand, within EX28DRAFT_0855at 867.818 kb on + strand, within EX28DRAFT_0855at 867.871 kb on + strand, within EX28DRAFT_0855at 867.871 kb on + strand, within EX28DRAFT_0855at 868.060 kb on + strand, within EX28DRAFT_0855at 868.060 kb on + strand, within EX28DRAFT_0855at 868.061 kb on - strand, within EX28DRAFT_0855at 868.066 kb on - strand, within EX28DRAFT_0855at 868.082 kb on + strand, within EX28DRAFT_0855at 868.083 kb on - strand, within EX28DRAFT_0855at 868.278 kb on + strandat 868.341 kb on - strandat 868.374 kb on - strandat 868.381 kb on + strandat 868.382 kb on - strandat 868.421 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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865,869 + EX28DRAFT_0852 0.86 +0.6
865,869 + EX28DRAFT_0852 0.86 -0.1
865,869 + EX28DRAFT_0852 0.86 -1.1
865,869 + EX28DRAFT_0852 0.86 +0.1
865,869 + EX28DRAFT_0852 0.86 -0.1
865,870 - EX28DRAFT_0852 0.86 +0.4
865,870 - EX28DRAFT_0852 0.86 -0.9
865,870 - EX28DRAFT_0852 0.86 -0.5
865,893 + EX28DRAFT_0852 0.88 -0.1
865,893 + EX28DRAFT_0852 0.88 -1.1
865,974 - -0.0
866,227 - EX28DRAFT_0853 0.21 +0.5
866,799 + +0.3
866,799 + +0.2
866,800 - +0.3
866,825 - +0.0
867,013 + EX28DRAFT_0854 0.34 +1.4
867,013 + EX28DRAFT_0854 0.34 +0.1
867,013 + EX28DRAFT_0854 0.34 +0.6
867,014 - EX28DRAFT_0854 0.34 +1.9
867,014 - EX28DRAFT_0854 0.34 +0.5
867,234 + EX28DRAFT_0854 0.66 +0.7
867,235 - EX28DRAFT_0854 0.66 -0.5
867,399 + +1.1
867,400 - -0.1
867,400 - +1.0
867,421 + -0.1
867,629 + EX28DRAFT_0855 0.19 +0.5
867,630 - EX28DRAFT_0855 0.19 +0.3
867,630 - EX28DRAFT_0855 0.19 -0.0
867,680 - EX28DRAFT_0855 0.25 +0.3
867,692 - EX28DRAFT_0855 0.26 -0.5
867,692 - EX28DRAFT_0855 0.26 -0.0
867,696 - EX28DRAFT_0855 0.26 -0.3
867,705 - EX28DRAFT_0855 0.27 +1.1
867,778 - EX28DRAFT_0855 0.36 +0.2
867,818 + EX28DRAFT_0855 0.40 +1.5
867,818 + EX28DRAFT_0855 0.40 -0.6
867,871 + EX28DRAFT_0855 0.46 -0.3
867,871 + EX28DRAFT_0855 0.46 -0.9
868,060 + EX28DRAFT_0855 0.67 +0.8
868,060 + EX28DRAFT_0855 0.67 -0.2
868,061 - EX28DRAFT_0855 0.67 -0.3
868,066 - EX28DRAFT_0855 0.68 -2.0
868,082 + EX28DRAFT_0855 0.69 +0.3
868,083 - EX28DRAFT_0855 0.70 +0.1
868,278 + -0.4
868,341 - +0.5
868,374 - +1.2
868,381 + +0.5
868,382 - -3.2
868,421 - -1.5

Or see this region's nucleotide sequence