Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0612

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0611 and EX28DRAFT_0612 overlap by 4 nucleotidesEX28DRAFT_0612 and EX28DRAFT_0613 are separated by 21 nucleotides EX28DRAFT_0611: EX28DRAFT_0611 - Flagellar hook-length control protein, at 608,998 to 610,233 _0611 EX28DRAFT_0612: EX28DRAFT_0612 - flagellar export protein FliJ, at 610,230 to 610,673 _0612 EX28DRAFT_0613: EX28DRAFT_0613 - flagellar protein export ATPase FliI, at 610,695 to 612,065 _0613 Position (kb) 610 611Strain fitness (log2 ratio) -3 -2 -1 0 1at 609.372 kb on + strand, within EX28DRAFT_0611at 609.493 kb on - strand, within EX28DRAFT_0611at 609.507 kb on + strand, within EX28DRAFT_0611at 609.507 kb on + strand, within EX28DRAFT_0611at 609.508 kb on - strand, within EX28DRAFT_0611at 609.508 kb on - strand, within EX28DRAFT_0611at 609.579 kb on + strand, within EX28DRAFT_0611at 609.640 kb on - strand, within EX28DRAFT_0611at 609.654 kb on + strand, within EX28DRAFT_0611at 609.654 kb on + strand, within EX28DRAFT_0611at 609.654 kb on + strand, within EX28DRAFT_0611at 609.774 kb on + strand, within EX28DRAFT_0611at 609.849 kb on + strand, within EX28DRAFT_0611at 609.900 kb on + strand, within EX28DRAFT_0611at 609.931 kb on - strand, within EX28DRAFT_0611at 610.332 kb on + strand, within EX28DRAFT_0612at 610.332 kb on + strand, within EX28DRAFT_0612at 610.469 kb on - strand, within EX28DRAFT_0612at 610.469 kb on - strand, within EX28DRAFT_0612at 610.473 kb on - strand, within EX28DRAFT_0612at 610.473 kb on - strand, within EX28DRAFT_0612at 610.599 kb on + strand, within EX28DRAFT_0612at 610.696 kb on + strandat 610.696 kb on + strandat 610.697 kb on - strandat 610.926 kb on + strand, within EX28DRAFT_0613at 611.015 kb on + strand, within EX28DRAFT_0613at 611.015 kb on + strand, within EX28DRAFT_0613at 611.015 kb on + strand, within EX28DRAFT_0613at 611.016 kb on - strand, within EX28DRAFT_0613at 611.016 kb on - strand, within EX28DRAFT_0613at 611.082 kb on + strand, within EX28DRAFT_0613at 611.082 kb on + strand, within EX28DRAFT_0613at 611.087 kb on + strand, within EX28DRAFT_0613at 611.089 kb on + strand, within EX28DRAFT_0613at 611.090 kb on - strand, within EX28DRAFT_0613at 611.409 kb on - strand, within EX28DRAFT_0613at 611.419 kb on - strand, within EX28DRAFT_0613at 611.473 kb on + strand, within EX28DRAFT_0613at 611.504 kb on + strand, within EX28DRAFT_0613at 611.505 kb on - strand, within EX28DRAFT_0613at 611.534 kb on + strand, within EX28DRAFT_0613at 611.535 kb on - strand, within EX28DRAFT_0613

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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609,372 + EX28DRAFT_0611 0.30 +0.1
609,493 - EX28DRAFT_0611 0.40 -2.8
609,507 + EX28DRAFT_0611 0.41 +0.6
609,507 + EX28DRAFT_0611 0.41 -0.3
609,508 - EX28DRAFT_0611 0.41 +0.1
609,508 - EX28DRAFT_0611 0.41 +0.1
609,579 + EX28DRAFT_0611 0.47 +0.4
609,640 - EX28DRAFT_0611 0.52 +0.1
609,654 + EX28DRAFT_0611 0.53 -0.1
609,654 + EX28DRAFT_0611 0.53 +0.0
609,654 + EX28DRAFT_0611 0.53 -0.8
609,774 + EX28DRAFT_0611 0.63 -0.2
609,849 + EX28DRAFT_0611 0.69 +0.1
609,900 + EX28DRAFT_0611 0.73 -0.5
609,931 - EX28DRAFT_0611 0.75 -0.3
610,332 + EX28DRAFT_0612 0.23 -0.9
610,332 + EX28DRAFT_0612 0.23 -0.3
610,469 - EX28DRAFT_0612 0.54 -2.4
610,469 - EX28DRAFT_0612 0.54 -0.5
610,473 - EX28DRAFT_0612 0.55 +0.1
610,473 - EX28DRAFT_0612 0.55 -0.2
610,599 + EX28DRAFT_0612 0.83 -0.3
610,696 + -0.1
610,696 + -0.1
610,697 - +0.4
610,926 + EX28DRAFT_0613 0.17 -2.7
611,015 + EX28DRAFT_0613 0.23 -0.9
611,015 + EX28DRAFT_0613 0.23 -0.8
611,015 + EX28DRAFT_0613 0.23 -0.1
611,016 - EX28DRAFT_0613 0.23 +0.3
611,016 - EX28DRAFT_0613 0.23 +0.4
611,082 + EX28DRAFT_0613 0.28 -0.1
611,082 + EX28DRAFT_0613 0.28 -0.5
611,087 + EX28DRAFT_0613 0.29 +0.4
611,089 + EX28DRAFT_0613 0.29 -0.7
611,090 - EX28DRAFT_0613 0.29 +0.2
611,409 - EX28DRAFT_0613 0.52 -0.0
611,419 - EX28DRAFT_0613 0.53 -0.0
611,473 + EX28DRAFT_0613 0.57 -0.3
611,504 + EX28DRAFT_0613 0.59 -0.3
611,505 - EX28DRAFT_0613 0.59 -0.2
611,534 + EX28DRAFT_0613 0.61 -0.2
611,535 - EX28DRAFT_0613 0.61 +0.1

Or see this region's nucleotide sequence