Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0484 and EX28DRAFT_0485 are separated by 212 nucleotides EX28DRAFT_0485 and EX28DRAFT_0486 are separated by 130 nucleotides
EX28DRAFT_0484: EX28DRAFT_0484 - RND family efflux transporter, MFP subunit, at 471,540 to 472,742
_0484
EX28DRAFT_0485: EX28DRAFT_0485 - Molecular chaperone, at 472,955 to 474,307
_0485
EX28DRAFT_0486: EX28DRAFT_0486 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 474,438 to 475,310
_0486
EX28DRAFT_0487: EX28DRAFT_0487 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 475,275 to 478,604
_0487
Position (kb) 472
473
474
475 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 472.731 kb on - strand at 472.749 kb on - strand at 472.749 kb on - strand at 472.749 kb on - strand at 472.781 kb on - strand at 472.783 kb on + strand at 472.784 kb on - strand at 472.784 kb on - strand at 472.822 kb on - strand at 472.822 kb on - strand at 472.861 kb on + strand at 472.861 kb on + strand at 472.960 kb on + strand at 472.961 kb on - strand at 472.961 kb on - strand at 472.961 kb on - strand at 473.097 kb on + strand, within EX28DRAFT_0485 at 473.097 kb on + strand, within EX28DRAFT_0485 at 473.227 kb on + strand, within EX28DRAFT_0485 at 473.228 kb on - strand, within EX28DRAFT_0485 at 473.290 kb on + strand, within EX28DRAFT_0485 at 473.608 kb on + strand, within EX28DRAFT_0485 at 473.666 kb on + strand, within EX28DRAFT_0485 at 473.667 kb on - strand, within EX28DRAFT_0485 at 473.667 kb on - strand, within EX28DRAFT_0485 at 473.667 kb on - strand, within EX28DRAFT_0485 at 473.899 kb on + strand, within EX28DRAFT_0485 at 473.997 kb on + strand, within EX28DRAFT_0485 at 473.998 kb on - strand, within EX28DRAFT_0485 at 474.022 kb on - strand, within EX28DRAFT_0485 at 474.064 kb on + strand, within EX28DRAFT_0485 at 474.065 kb on - strand, within EX28DRAFT_0485 at 474.283 kb on + strand at 474.288 kb on + strand at 474.289 kb on - strand at 474.311 kb on - strand at 474.311 kb on - strand at 474.391 kb on + strand at 474.391 kb on + strand at 474.392 kb on - strand at 474.392 kb on - strand at 474.442 kb on - strand at 474.465 kb on + strand at 474.538 kb on - strand, within EX28DRAFT_0486 at 474.541 kb on - strand, within EX28DRAFT_0486 at 474.578 kb on - strand, within EX28DRAFT_0486 at 474.609 kb on - strand, within EX28DRAFT_0486 at 474.609 kb on - strand, within EX28DRAFT_0486 at 475.063 kb on + strand, within EX28DRAFT_0486 at 475.063 kb on + strand, within EX28DRAFT_0486 at 475.063 kb on + strand, within EX28DRAFT_0486 at 475.101 kb on + strand, within EX28DRAFT_0486 at 475.153 kb on - strand, within EX28DRAFT_0486 at 475.153 kb on - strand, within EX28DRAFT_0486 at 475.247 kb on + strand at 475.248 kb on - strand at 475.248 kb on - strand at 475.248 kb on - strand at 475.248 kb on - strand at 475.254 kb on + strand at 475.255 kb on - strand at 475.256 kb on + strand at 475.291 kb on + strand at 475.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 472,731 - -1.1 472,749 - +0.5 472,749 - +0.0 472,749 - +0.1 472,781 - -1.4 472,783 + +0.1 472,784 - -2.5 472,784 - -2.4 472,822 - -0.2 472,822 - -0.1 472,861 + +0.6 472,861 + +0.1 472,960 + +0.2 472,961 - -0.1 472,961 - -0.4 472,961 - -0.2 473,097 + EX28DRAFT_0485 0.10 +0.6 473,097 + EX28DRAFT_0485 0.10 -1.3 473,227 + EX28DRAFT_0485 0.20 -0.6 473,228 - EX28DRAFT_0485 0.20 -0.8 473,290 + EX28DRAFT_0485 0.25 -0.1 473,608 + EX28DRAFT_0485 0.48 -0.6 473,666 + EX28DRAFT_0485 0.53 +0.1 473,667 - EX28DRAFT_0485 0.53 -0.8 473,667 - EX28DRAFT_0485 0.53 -0.4 473,667 - EX28DRAFT_0485 0.53 +0.1 473,899 + EX28DRAFT_0485 0.70 -0.6 473,997 + EX28DRAFT_0485 0.77 -0.3 473,998 - EX28DRAFT_0485 0.77 +0.9 474,022 - EX28DRAFT_0485 0.79 -1.0 474,064 + EX28DRAFT_0485 0.82 -0.1 474,065 - EX28DRAFT_0485 0.82 -0.0 474,283 + -0.1 474,288 + +0.3 474,289 - -0.3 474,311 - +0.6 474,311 - -0.1 474,391 + -6.0 474,391 + +1.0 474,392 - -1.1 474,392 - +0.1 474,442 - +0.9 474,465 + +0.1 474,538 - EX28DRAFT_0486 0.11 -0.6 474,541 - EX28DRAFT_0486 0.12 -1.3 474,578 - EX28DRAFT_0486 0.16 -0.9 474,609 - EX28DRAFT_0486 0.20 +0.2 474,609 - EX28DRAFT_0486 0.20 +0.3 475,063 + EX28DRAFT_0486 0.72 +0.2 475,063 + EX28DRAFT_0486 0.72 +0.1 475,063 + EX28DRAFT_0486 0.72 +0.5 475,101 + EX28DRAFT_0486 0.76 +0.0 475,153 - EX28DRAFT_0486 0.82 -0.0 475,153 - EX28DRAFT_0486 0.82 -0.2 475,247 + -2.2 475,248 - +0.3 475,248 - -0.9 475,248 - -0.5 475,248 - -0.2 475,254 + +0.2 475,255 - -0.6 475,256 + -2.8 475,291 + -0.8 475,292 - -3.7
Or see this region's nucleotide sequence