Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0415 and EX28DRAFT_0416 are separated by 59 nucleotides EX28DRAFT_0416 and EX28DRAFT_0417 are separated by 41 nucleotides EX28DRAFT_0417 and EX28DRAFT_0418 are separated by 301 nucleotides
EX28DRAFT_0415: EX28DRAFT_0415 - GMP synthase - Glutamine amidotransferase domain, at 392,700 to 393,416
_0415
EX28DRAFT_0416: EX28DRAFT_0416 - AraC-type DNA-binding domain-containing proteins, at 393,476 to 394,273
_0416
EX28DRAFT_0417: EX28DRAFT_0417 - tRNA-dihydrouridine synthase, at 394,315 to 395,247
_0417
EX28DRAFT_0418: EX28DRAFT_0418 - Carbohydrate-selective porin, at 395,549 to 396,895
_0418
Position (kb) 394
395
396 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 393.328 kb on + strand, within EX28DRAFT_0415 at 393.335 kb on + strand, within EX28DRAFT_0415 at 393.336 kb on - strand, within EX28DRAFT_0415 at 393.338 kb on + strand, within EX28DRAFT_0415 at 393.434 kb on - strand at 393.439 kb on + strand at 393.440 kb on - strand at 393.453 kb on + strand at 393.453 kb on + strand at 393.454 kb on - strand at 393.454 kb on - strand at 393.541 kb on + strand at 393.541 kb on + strand at 393.541 kb on + strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.545 kb on + strand at 393.547 kb on + strand at 393.652 kb on - strand, within EX28DRAFT_0416 at 393.652 kb on - strand, within EX28DRAFT_0416 at 393.699 kb on - strand, within EX28DRAFT_0416 at 393.931 kb on - strand, within EX28DRAFT_0416 at 393.954 kb on + strand, within EX28DRAFT_0416 at 394.078 kb on + strand, within EX28DRAFT_0416 at 394.271 kb on + strand at 394.285 kb on + strand at 394.285 kb on + strand at 394.285 kb on + strand at 394.308 kb on + strand at 394.315 kb on - strand at 394.390 kb on + strand at 394.472 kb on + strand, within EX28DRAFT_0417 at 394.473 kb on - strand, within EX28DRAFT_0417 at 394.840 kb on + strand, within EX28DRAFT_0417 at 394.858 kb on - strand, within EX28DRAFT_0417 at 395.024 kb on + strand, within EX28DRAFT_0417 at 395.029 kb on + strand, within EX28DRAFT_0417 at 395.029 kb on + strand, within EX28DRAFT_0417 at 395.116 kb on + strand, within EX28DRAFT_0417 at 395.117 kb on - strand, within EX28DRAFT_0417 at 395.555 kb on + strand at 395.682 kb on + strand at 395.686 kb on + strand, within EX28DRAFT_0418 at 395.711 kb on - strand, within EX28DRAFT_0418 at 395.714 kb on + strand, within EX28DRAFT_0418 at 395.714 kb on + strand, within EX28DRAFT_0418 at 395.714 kb on + strand, within EX28DRAFT_0418 at 395.765 kb on - strand, within EX28DRAFT_0418
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 393,328 + EX28DRAFT_0415 0.88 -0.7 393,335 + EX28DRAFT_0415 0.89 +0.2 393,336 - EX28DRAFT_0415 0.89 -1.7 393,338 + EX28DRAFT_0415 0.89 -0.2 393,434 - -0.2 393,439 + +0.3 393,440 - -0.5 393,453 + +0.2 393,453 + -0.1 393,454 - -1.4 393,454 - -0.4 393,541 + -0.0 393,541 + +0.8 393,541 + -1.2 393,542 - -1.2 393,542 - +0.6 393,542 - -0.5 393,542 - -0.9 393,542 - -0.6 393,542 - -1.1 393,545 + -0.2 393,547 + -0.3 393,652 - EX28DRAFT_0416 0.22 +0.2 393,652 - EX28DRAFT_0416 0.22 -1.8 393,699 - EX28DRAFT_0416 0.28 +1.0 393,931 - EX28DRAFT_0416 0.57 +0.6 393,954 + EX28DRAFT_0416 0.60 +0.6 394,078 + EX28DRAFT_0416 0.75 +0.3 394,271 + -1.3 394,285 + -0.0 394,285 + +0.1 394,285 + -0.9 394,308 + -0.0 394,315 - +0.8 394,390 + +0.6 394,472 + EX28DRAFT_0417 0.17 +0.2 394,473 - EX28DRAFT_0417 0.17 +0.5 394,840 + EX28DRAFT_0417 0.56 +0.1 394,858 - EX28DRAFT_0417 0.58 -3.4 395,024 + EX28DRAFT_0417 0.76 -0.4 395,029 + EX28DRAFT_0417 0.77 -0.7 395,029 + EX28DRAFT_0417 0.77 -0.0 395,116 + EX28DRAFT_0417 0.86 -0.9 395,117 - EX28DRAFT_0417 0.86 -0.7 395,555 + -1.7 395,682 + +0.0 395,686 + EX28DRAFT_0418 0.10 +0.4 395,711 - EX28DRAFT_0418 0.12 -0.4 395,714 + EX28DRAFT_0418 0.12 -0.5 395,714 + EX28DRAFT_0418 0.12 -1.3 395,714 + EX28DRAFT_0418 0.12 -0.2 395,765 - EX28DRAFT_0418 0.16 -0.6
Or see this region's nucleotide sequence