Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0405

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0403 and EX28DRAFT_0404 are separated by 102 nucleotidesEX28DRAFT_0404 and EX28DRAFT_0405 are separated by 19 nucleotidesEX28DRAFT_0405 and EX28DRAFT_0406 are separated by 155 nucleotides EX28DRAFT_0403: EX28DRAFT_0403 - Protein of unknown function (DUF1228), at 379,807 to 380,955 _0403 EX28DRAFT_0404: EX28DRAFT_0404 - GTP cyclohydrolase I, at 381,058 to 381,726 _0404 EX28DRAFT_0405: EX28DRAFT_0405 - Predicted membrane protein, at 381,746 to 382,903 _0405 EX28DRAFT_0406: EX28DRAFT_0406 - Transcriptional regulators, at 383,059 to 384,081 _0406 Position (kb) 381 382 383Strain fitness (log2 ratio) -2 -1 0 1 2 3at 380.770 kb on + strand, within EX28DRAFT_0403at 380.770 kb on + strand, within EX28DRAFT_0403at 380.770 kb on + strand, within EX28DRAFT_0403at 380.771 kb on - strand, within EX28DRAFT_0403at 380.771 kb on - strand, within EX28DRAFT_0403at 380.773 kb on - strand, within EX28DRAFT_0403at 380.954 kb on - strandat 380.954 kb on - strandat 380.957 kb on + strandat 380.958 kb on - strandat 381.808 kb on + strandat 381.809 kb on - strandat 381.811 kb on + strandat 381.812 kb on - strandat 381.922 kb on + strand, within EX28DRAFT_0405at 382.063 kb on + strand, within EX28DRAFT_0405at 382.128 kb on + strand, within EX28DRAFT_0405at 382.128 kb on + strand, within EX28DRAFT_0405at 382.141 kb on + strand, within EX28DRAFT_0405at 382.160 kb on + strand, within EX28DRAFT_0405at 382.161 kb on - strand, within EX28DRAFT_0405at 382.161 kb on - strand, within EX28DRAFT_0405at 382.161 kb on - strand, within EX28DRAFT_0405at 382.521 kb on - strand, within EX28DRAFT_0405at 382.601 kb on + strand, within EX28DRAFT_0405at 382.656 kb on + strand, within EX28DRAFT_0405at 382.679 kb on + strand, within EX28DRAFT_0405at 382.783 kb on - strand, within EX28DRAFT_0405at 382.786 kb on + strand, within EX28DRAFT_0405at 382.817 kb on + strandat 382.817 kb on + strandat 382.818 kb on - strandat 383.007 kb on + strandat 383.059 kb on - strandat 383.059 kb on - strandat 383.166 kb on - strand, within EX28DRAFT_0406at 383.264 kb on + strand, within EX28DRAFT_0406at 383.264 kb on + strand, within EX28DRAFT_0406at 383.265 kb on - strand, within EX28DRAFT_0406at 383.265 kb on - strand, within EX28DRAFT_0406at 383.329 kb on + strand, within EX28DRAFT_0406at 383.346 kb on + strand, within EX28DRAFT_0406at 383.347 kb on - strand, within EX28DRAFT_0406at 383.347 kb on - strand, within EX28DRAFT_0406at 383.347 kb on - strand, within EX28DRAFT_0406at 383.351 kb on - strand, within EX28DRAFT_0406at 383.406 kb on + strand, within EX28DRAFT_0406at 383.461 kb on - strand, within EX28DRAFT_0406at 383.619 kb on + strand, within EX28DRAFT_0406at 383.620 kb on - strand, within EX28DRAFT_0406at 383.772 kb on + strand, within EX28DRAFT_0406at 383.772 kb on + strand, within EX28DRAFT_0406at 383.789 kb on - strand, within EX28DRAFT_0406at 383.858 kb on + strand, within EX28DRAFT_0406at 383.859 kb on - strand, within EX28DRAFT_0406

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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380,770 + EX28DRAFT_0403 0.84 -0.1
380,770 + EX28DRAFT_0403 0.84 -0.2
380,770 + EX28DRAFT_0403 0.84 +0.3
380,771 - EX28DRAFT_0403 0.84 -0.8
380,771 - EX28DRAFT_0403 0.84 +0.0
380,773 - EX28DRAFT_0403 0.84 +1.1
380,954 - -1.7
380,954 - +0.5
380,957 + +1.1
380,958 - +0.4
381,808 + +0.6
381,809 - +0.1
381,811 + +0.0
381,812 - +0.5
381,922 + EX28DRAFT_0405 0.15 +0.1
382,063 + EX28DRAFT_0405 0.27 +0.1
382,128 + EX28DRAFT_0405 0.33 +0.9
382,128 + EX28DRAFT_0405 0.33 +0.4
382,141 + EX28DRAFT_0405 0.34 -0.2
382,160 + EX28DRAFT_0405 0.36 +0.3
382,161 - EX28DRAFT_0405 0.36 -0.9
382,161 - EX28DRAFT_0405 0.36 +0.3
382,161 - EX28DRAFT_0405 0.36 +1.1
382,521 - EX28DRAFT_0405 0.67 +0.3
382,601 + EX28DRAFT_0405 0.74 -0.1
382,656 + EX28DRAFT_0405 0.79 -1.3
382,679 + EX28DRAFT_0405 0.81 +0.1
382,783 - EX28DRAFT_0405 0.90 +0.5
382,786 + EX28DRAFT_0405 0.90 -1.9
382,817 + +0.1
382,817 + +0.4
382,818 - -1.0
383,007 + +1.5
383,059 - -0.1
383,059 - -0.3
383,166 - EX28DRAFT_0406 0.10 +0.2
383,264 + EX28DRAFT_0406 0.20 +0.4
383,264 + EX28DRAFT_0406 0.20 +0.1
383,265 - EX28DRAFT_0406 0.20 +1.2
383,265 - EX28DRAFT_0406 0.20 +0.0
383,329 + EX28DRAFT_0406 0.26 -0.2
383,346 + EX28DRAFT_0406 0.28 +0.9
383,347 - EX28DRAFT_0406 0.28 -1.2
383,347 - EX28DRAFT_0406 0.28 -1.8
383,347 - EX28DRAFT_0406 0.28 +0.6
383,351 - EX28DRAFT_0406 0.29 -1.3
383,406 + EX28DRAFT_0406 0.34 +0.0
383,461 - EX28DRAFT_0406 0.39 -0.1
383,619 + EX28DRAFT_0406 0.55 +2.8
383,620 - EX28DRAFT_0406 0.55 -0.4
383,772 + EX28DRAFT_0406 0.70 -0.4
383,772 + EX28DRAFT_0406 0.70 -0.6
383,789 - EX28DRAFT_0406 0.71 -0.2
383,858 + EX28DRAFT_0406 0.78 +1.4
383,859 - EX28DRAFT_0406 0.78 -1.7

Or see this region's nucleotide sequence