Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0344

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0342 and EX28DRAFT_0343 overlap by 1 nucleotidesEX28DRAFT_0343 and EX28DRAFT_0344 overlap by 4 nucleotidesEX28DRAFT_0344 and EX28DRAFT_0345 are separated by 124 nucleotidesEX28DRAFT_0345 and EX28DRAFT_0346 are separated by 93 nucleotides EX28DRAFT_0342: EX28DRAFT_0342 - 1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36), at 304,440 to 305,297 _0342 EX28DRAFT_0343: EX28DRAFT_0343 - O-succinylbenzoate synthase (EC 4.2.1.113), at 305,297 to 306,262 _0343 EX28DRAFT_0344: EX28DRAFT_0344 - O-succinylbenzoate-CoA ligase, at 306,259 to 307,620 _0344 EX28DRAFT_0345: EX28DRAFT_0345 - YfaZ precursor, at 307,745 to 308,284 _0345 EX28DRAFT_0346: EX28DRAFT_0346 - molybdenum cofactor synthesis domain/competence/damage-inducible protein CinA N-terminal domain, at 308,378 to 309,577 _0346 Position (kb) 306 307 308Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 305.280 kb on + strandat 305.280 kb on + strandat 305.281 kb on - strandat 305.281 kb on - strandat 305.281 kb on - strandat 305.296 kb on - strandat 305.557 kb on + strand, within EX28DRAFT_0343at 305.606 kb on - strand, within EX28DRAFT_0343at 305.828 kb on + strand, within EX28DRAFT_0343at 305.923 kb on - strand, within EX28DRAFT_0343at 305.923 kb on - strand, within EX28DRAFT_0343at 306.439 kb on - strand, within EX28DRAFT_0344at 306.715 kb on - strand, within EX28DRAFT_0344at 306.715 kb on - strand, within EX28DRAFT_0344at 306.715 kb on - strand, within EX28DRAFT_0344at 306.831 kb on - strand, within EX28DRAFT_0344at 306.906 kb on + strand, within EX28DRAFT_0344at 306.948 kb on + strand, within EX28DRAFT_0344at 307.118 kb on + strand, within EX28DRAFT_0344at 307.119 kb on - strand, within EX28DRAFT_0344at 307.151 kb on + strand, within EX28DRAFT_0344at 307.152 kb on - strand, within EX28DRAFT_0344at 307.152 kb on - strand, within EX28DRAFT_0344at 307.185 kb on + strand, within EX28DRAFT_0344at 307.217 kb on + strand, within EX28DRAFT_0344at 307.217 kb on + strand, within EX28DRAFT_0344at 307.218 kb on - strand, within EX28DRAFT_0344at 307.566 kb on + strandat 307.566 kb on + strandat 307.567 kb on - strandat 307.619 kb on - strandat 307.621 kb on + strandat 307.635 kb on - strandat 307.638 kb on + strandat 307.646 kb on - strandat 307.719 kb on + strandat 307.719 kb on + strandat 307.720 kb on - strandat 307.722 kb on - strandat 307.724 kb on + strandat 307.725 kb on - strandat 307.725 kb on - strandat 307.785 kb on + strandat 307.836 kb on - strand, within EX28DRAFT_0345at 307.837 kb on + strand, within EX28DRAFT_0345at 307.838 kb on - strand, within EX28DRAFT_0345at 307.990 kb on + strand, within EX28DRAFT_0345at 307.990 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.995 kb on - strand, within EX28DRAFT_0345at 307.995 kb on - strand, within EX28DRAFT_0345at 307.995 kb on - strand, within EX28DRAFT_0345at 307.996 kb on + strand, within EX28DRAFT_0345at 307.996 kb on + strand, within EX28DRAFT_0345at 307.996 kb on + strand, within EX28DRAFT_0345at 308.090 kb on + strand, within EX28DRAFT_0345at 308.090 kb on + strand, within EX28DRAFT_0345at 308.090 kb on + strand, within EX28DRAFT_0345at 308.091 kb on - strand, within EX28DRAFT_0345at 308.091 kb on - strand, within EX28DRAFT_0345at 308.093 kb on + strand, within EX28DRAFT_0345at 308.093 kb on + strand, within EX28DRAFT_0345at 308.094 kb on - strand, within EX28DRAFT_0345at 308.094 kb on - strand, within EX28DRAFT_0345at 308.283 kb on - strandat 308.283 kb on - strandat 308.345 kb on - strandat 308.345 kb on - strandat 308.346 kb on + strandat 308.347 kb on - strandat 308.363 kb on - strandat 308.376 kb on + strandat 308.377 kb on - strandat 308.383 kb on + strandat 308.432 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
305,280 + -0.8
305,280 + -0.3
305,281 - +0.0
305,281 - -2.1
305,281 - -0.0
305,296 - -1.1
305,557 + EX28DRAFT_0343 0.27 -0.2
305,606 - EX28DRAFT_0343 0.32 -1.9
305,828 + EX28DRAFT_0343 0.55 -0.4
305,923 - EX28DRAFT_0343 0.65 -1.4
305,923 - EX28DRAFT_0343 0.65 -0.3
306,439 - EX28DRAFT_0344 0.13 -0.1
306,715 - EX28DRAFT_0344 0.33 +0.4
306,715 - EX28DRAFT_0344 0.33 -0.2
306,715 - EX28DRAFT_0344 0.33 -1.2
306,831 - EX28DRAFT_0344 0.42 -0.5
306,906 + EX28DRAFT_0344 0.48 -0.0
306,948 + EX28DRAFT_0344 0.51 +0.1
307,118 + EX28DRAFT_0344 0.63 +0.1
307,119 - EX28DRAFT_0344 0.63 +0.1
307,151 + EX28DRAFT_0344 0.65 +0.2
307,152 - EX28DRAFT_0344 0.66 -1.2
307,152 - EX28DRAFT_0344 0.66 +1.0
307,185 + EX28DRAFT_0344 0.68 -0.3
307,217 + EX28DRAFT_0344 0.70 -0.3
307,217 + EX28DRAFT_0344 0.70 -0.7
307,218 - EX28DRAFT_0344 0.70 -0.5
307,566 + +0.4
307,566 + +0.2
307,567 - +2.1
307,619 - -2.9
307,621 + +0.2
307,635 - -0.1
307,638 + -2.0
307,646 - +0.4
307,719 + -3.5
307,719 + -0.6
307,720 - -0.9
307,722 - -0.6
307,724 + -3.2
307,725 - -0.6
307,725 - +0.0
307,785 + +0.3
307,836 - EX28DRAFT_0345 0.17 +0.3
307,837 + EX28DRAFT_0345 0.17 +0.7
307,838 - EX28DRAFT_0345 0.17 +0.4
307,990 + EX28DRAFT_0345 0.45 -3.3
307,990 + EX28DRAFT_0345 0.45 +0.2
307,994 + EX28DRAFT_0345 0.46 +2.5
307,994 + EX28DRAFT_0345 0.46 +0.2
307,994 + EX28DRAFT_0345 0.46 +0.0
307,994 + EX28DRAFT_0345 0.46 +0.0
307,994 + EX28DRAFT_0345 0.46 -0.0
307,994 + EX28DRAFT_0345 0.46 -0.4
307,994 + EX28DRAFT_0345 0.46 -1.8
307,994 + EX28DRAFT_0345 0.46 +0.1
307,995 - EX28DRAFT_0345 0.46 -0.1
307,995 - EX28DRAFT_0345 0.46 +0.0
307,995 - EX28DRAFT_0345 0.46 -0.5
307,996 + EX28DRAFT_0345 0.46 -0.0
307,996 + EX28DRAFT_0345 0.46 -1.8
307,996 + EX28DRAFT_0345 0.46 -0.5
308,090 + EX28DRAFT_0345 0.64 +0.7
308,090 + EX28DRAFT_0345 0.64 +0.6
308,090 + EX28DRAFT_0345 0.64 -0.9
308,091 - EX28DRAFT_0345 0.64 -0.0
308,091 - EX28DRAFT_0345 0.64 -0.3
308,093 + EX28DRAFT_0345 0.64 +0.8
308,093 + EX28DRAFT_0345 0.64 -0.6
308,094 - EX28DRAFT_0345 0.65 -0.3
308,094 - EX28DRAFT_0345 0.65 -0.2
308,283 - -0.9
308,283 - -0.8
308,345 - -0.7
308,345 - -0.0
308,346 + -0.3
308,347 - +0.3
308,363 - +0.6
308,376 + -0.4
308,377 - +0.1
308,383 + +0.7
308,432 - +0.2

Or see this region's nucleotide sequence