Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0225 and EX28DRAFT_0226 are separated by 42 nucleotides EX28DRAFT_0226 and EX28DRAFT_0227 are separated by 22 nucleotides EX28DRAFT_0227 and EX28DRAFT_0228 are separated by 217 nucleotides EX28DRAFT_0228 and EX28DRAFT_0229 are separated by 41 nucleotides
EX28DRAFT_0225: EX28DRAFT_0225 - glutamyl-tRNA synthetase, bacterial family, at 176,638 to 178,053
_0225
EX28DRAFT_0226: EX28DRAFT_0226 - Putative transcription regulator (DUF1323), at 178,096 to 178,467
_0226
EX28DRAFT_0227: EX28DRAFT_0227 - Putative transcription regulator (DUF1323), at 178,490 to 178,852
_0227
EX28DRAFT_0228: EX28DRAFT_0228 - tRNA, at 179,070 to 179,145
_0228
EX28DRAFT_0229: EX28DRAFT_0229 - tRNA, at 179,187 to 179,262
_0229
Position (kb) 178
179 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 178.051 kb on + strand at 178.052 kb on - strand at 178.056 kb on - strand at 178.097 kb on + strand at 178.142 kb on - strand, within EX28DRAFT_0226 at 178.160 kb on - strand, within EX28DRAFT_0226 at 178.247 kb on + strand, within EX28DRAFT_0226 at 178.247 kb on + strand, within EX28DRAFT_0226 at 178.312 kb on - strand, within EX28DRAFT_0226 at 178.314 kb on + strand, within EX28DRAFT_0226 at 178.314 kb on + strand, within EX28DRAFT_0226 at 178.314 kb on + strand, within EX28DRAFT_0226 at 178.315 kb on - strand, within EX28DRAFT_0226 at 178.338 kb on + strand, within EX28DRAFT_0226 at 178.471 kb on - strand at 178.489 kb on - strand at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.624 kb on + strand, within EX28DRAFT_0227 at 178.625 kb on - strand, within EX28DRAFT_0227 at 178.712 kb on + strand, within EX28DRAFT_0227 at 178.783 kb on + strand, within EX28DRAFT_0227 at 178.783 kb on + strand, within EX28DRAFT_0227 at 178.784 kb on - strand, within EX28DRAFT_0227 at 178.804 kb on - strand, within EX28DRAFT_0227 at 178.896 kb on - strand at 178.896 kb on - strand at 178.898 kb on - strand at 179.035 kb on + strand at 179.064 kb on + strand at 179.064 kb on + strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.135 kb on + strand, within EX28DRAFT_0228 at 179.179 kb on + strand at 179.179 kb on + strand at 179.179 kb on + strand at 179.180 kb on - strand at 179.180 kb on - strand at 179.269 kb on + strand at 179.347 kb on + strand at 179.348 kb on - strand at 179.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 178,051 + -2.7 178,052 - -1.0 178,056 - +2.0 178,097 + +0.5 178,142 - EX28DRAFT_0226 0.12 +1.2 178,160 - EX28DRAFT_0226 0.17 +1.5 178,247 + EX28DRAFT_0226 0.41 +0.2 178,247 + EX28DRAFT_0226 0.41 +0.5 178,312 - EX28DRAFT_0226 0.58 +0.8 178,314 + EX28DRAFT_0226 0.59 +0.2 178,314 + EX28DRAFT_0226 0.59 +0.1 178,314 + EX28DRAFT_0226 0.59 -1.2 178,315 - EX28DRAFT_0226 0.59 +0.5 178,338 + EX28DRAFT_0226 0.65 +0.1 178,471 - +0.1 178,489 - +1.7 178,624 + EX28DRAFT_0227 0.37 -0.4 178,624 + EX28DRAFT_0227 0.37 +1.0 178,624 + EX28DRAFT_0227 0.37 -1.4 178,624 + EX28DRAFT_0227 0.37 +0.0 178,625 - EX28DRAFT_0227 0.37 -0.1 178,712 + EX28DRAFT_0227 0.61 +0.2 178,783 + EX28DRAFT_0227 0.81 -2.7 178,783 + EX28DRAFT_0227 0.81 -0.4 178,784 - EX28DRAFT_0227 0.81 -0.4 178,804 - EX28DRAFT_0227 0.87 -2.0 178,896 - +0.0 178,896 - -0.6 178,898 - +0.7 179,035 + +0.0 179,064 + -1.1 179,064 + -3.7 179,077 + -0.3 179,077 + -3.9 179,077 + +0.4 179,135 + EX28DRAFT_0228 0.86 -1.2 179,179 + -0.5 179,179 + +0.0 179,179 + +0.6 179,180 - -1.8 179,180 - +0.7 179,269 + -0.3 179,347 + +0.3 179,348 - +0.1 179,348 - -0.5
Or see this region's nucleotide sequence