Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0189 and EX28DRAFT_0190 are separated by 10 nucleotides EX28DRAFT_0190 and EX28DRAFT_0191 are separated by 556 nucleotides EX28DRAFT_0191 and EX28DRAFT_0192 are separated by 142 nucleotides
EX28DRAFT_0189: EX28DRAFT_0189 - succinyldiaminopimelate desuccinylase (EC 3.5.1.18), at 138,284 to 139,411
_0189
EX28DRAFT_0190: EX28DRAFT_0190 - transcriptional regulator, Spx/MgsR family, at 139,422 to 139,772
_0190
EX28DRAFT_0191: EX28DRAFT_0191 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 140,329 to 143,442
_0191
EX28DRAFT_0192: EX28DRAFT_0192 - Signal transduction histidine kinase, nitrate/nitrite-specific, at 143,585 to 145,279
_0192
Position (kb)
140
141
142
143
144 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 139.469 kb on + strand, within EX28DRAFT_0190 at 139.470 kb on - strand, within EX28DRAFT_0190 at 139.800 kb on + strand at 139.801 kb on - strand at 139.824 kb on - strand at 139.842 kb on + strand at 139.869 kb on - strand at 139.929 kb on - strand at 140.047 kb on + strand at 140.101 kb on + strand at 140.140 kb on + strand at 140.143 kb on + strand at 140.146 kb on + strand at 140.266 kb on - strand at 140.275 kb on + strand at 140.394 kb on - strand at 140.536 kb on + strand at 140.537 kb on - strand at 140.537 kb on - strand at 140.672 kb on + strand, within EX28DRAFT_0191 at 140.672 kb on + strand, within EX28DRAFT_0191 at 140.673 kb on - strand, within EX28DRAFT_0191 at 140.774 kb on + strand, within EX28DRAFT_0191 at 140.775 kb on - strand, within EX28DRAFT_0191 at 140.934 kb on + strand, within EX28DRAFT_0191 at 141.093 kb on + strand, within EX28DRAFT_0191 at 141.094 kb on - strand, within EX28DRAFT_0191 at 141.134 kb on + strand, within EX28DRAFT_0191 at 141.135 kb on - strand, within EX28DRAFT_0191 at 141.135 kb on - strand, within EX28DRAFT_0191 at 141.162 kb on + strand, within EX28DRAFT_0191 at 141.176 kb on + strand, within EX28DRAFT_0191 at 141.177 kb on - strand, within EX28DRAFT_0191 at 141.177 kb on - strand, within EX28DRAFT_0191 at 141.177 kb on - strand, within EX28DRAFT_0191 at 141.247 kb on - strand, within EX28DRAFT_0191 at 141.472 kb on - strand, within EX28DRAFT_0191 at 141.472 kb on - strand, within EX28DRAFT_0191 at 141.474 kb on + strand, within EX28DRAFT_0191 at 141.475 kb on - strand, within EX28DRAFT_0191 at 141.656 kb on + strand, within EX28DRAFT_0191 at 141.656 kb on + strand, within EX28DRAFT_0191 at 141.656 kb on + strand, within EX28DRAFT_0191 at 141.656 kb on + strand, within EX28DRAFT_0191 at 141.656 kb on + strand, within EX28DRAFT_0191 at 141.657 kb on - strand, within EX28DRAFT_0191 at 141.812 kb on + strand, within EX28DRAFT_0191 at 141.812 kb on + strand, within EX28DRAFT_0191 at 141.813 kb on - strand, within EX28DRAFT_0191 at 141.867 kb on - strand, within EX28DRAFT_0191 at 142.376 kb on + strand, within EX28DRAFT_0191 at 142.376 kb on + strand, within EX28DRAFT_0191 at 142.377 kb on - strand, within EX28DRAFT_0191 at 142.377 kb on - strand, within EX28DRAFT_0191 at 142.463 kb on + strand, within EX28DRAFT_0191 at 142.475 kb on + strand, within EX28DRAFT_0191 at 142.476 kb on - strand, within EX28DRAFT_0191 at 142.939 kb on - strand, within EX28DRAFT_0191 at 142.959 kb on + strand, within EX28DRAFT_0191 at 142.959 kb on + strand, within EX28DRAFT_0191 at 142.973 kb on + strand, within EX28DRAFT_0191 at 143.213 kb on + strand at 143.213 kb on + strand at 143.213 kb on + strand at 143.213 kb on + strand at 143.213 kb on + strand at 143.214 kb on - strand at 143.214 kb on - strand at 143.214 kb on - strand at 143.214 kb on - strand at 143.214 kb on - strand at 143.474 kb on + strand at 143.475 kb on - strand at 143.475 kb on - strand at 143.493 kb on - strand at 143.544 kb on + strand at 143.544 kb on + strand at 143.544 kb on + strand at 143.581 kb on - strand at 143.581 kb on - strand at 143.586 kb on + strand at 143.587 kb on - strand at 143.667 kb on - strand at 143.698 kb on + strand at 143.713 kb on - strand at 143.805 kb on - strand, within EX28DRAFT_0192 at 144.435 kb on + strand, within EX28DRAFT_0192 at 144.436 kb on - strand, within EX28DRAFT_0192 at 144.436 kb on - strand, within EX28DRAFT_0192
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 139,469 + EX28DRAFT_0190 0.13 -1.6 139,470 - EX28DRAFT_0190 0.14 -0.2 139,800 + +1.3 139,801 - +0.4 139,824 - -0.8 139,842 + +0.3 139,869 - +0.3 139,929 - -2.5 140,047 + -2.4 140,101 + +0.1 140,140 + -0.9 140,143 + -0.1 140,146 + -0.1 140,266 - -0.1 140,275 + -0.1 140,394 - +1.4 140,536 + -1.2 140,537 - -0.1 140,537 - +0.3 140,672 + EX28DRAFT_0191 0.11 +0.2 140,672 + EX28DRAFT_0191 0.11 -0.1 140,673 - EX28DRAFT_0191 0.11 +0.2 140,774 + EX28DRAFT_0191 0.14 +0.1 140,775 - EX28DRAFT_0191 0.14 -1.2 140,934 + EX28DRAFT_0191 0.19 +2.1 141,093 + EX28DRAFT_0191 0.25 +3.1 141,094 - EX28DRAFT_0191 0.25 +0.3 141,134 + EX28DRAFT_0191 0.26 +0.4 141,135 - EX28DRAFT_0191 0.26 -0.8 141,135 - EX28DRAFT_0191 0.26 -0.2 141,162 + EX28DRAFT_0191 0.27 +0.1 141,176 + EX28DRAFT_0191 0.27 +0.1 141,177 - EX28DRAFT_0191 0.27 -1.2 141,177 - EX28DRAFT_0191 0.27 +0.2 141,177 - EX28DRAFT_0191 0.27 +0.5 141,247 - EX28DRAFT_0191 0.29 +0.2 141,472 - EX28DRAFT_0191 0.37 -0.7 141,472 - EX28DRAFT_0191 0.37 +1.5 141,474 + EX28DRAFT_0191 0.37 +0.5 141,475 - EX28DRAFT_0191 0.37 +0.1 141,656 + EX28DRAFT_0191 0.43 -0.5 141,656 + EX28DRAFT_0191 0.43 +1.1 141,656 + EX28DRAFT_0191 0.43 +1.3 141,656 + EX28DRAFT_0191 0.43 -0.5 141,656 + EX28DRAFT_0191 0.43 +0.3 141,657 - EX28DRAFT_0191 0.43 -0.2 141,812 + EX28DRAFT_0191 0.48 +1.2 141,812 + EX28DRAFT_0191 0.48 -0.8 141,813 - EX28DRAFT_0191 0.48 +0.2 141,867 - EX28DRAFT_0191 0.49 +2.1 142,376 + EX28DRAFT_0191 0.66 -0.3 142,376 + EX28DRAFT_0191 0.66 -0.9 142,377 - EX28DRAFT_0191 0.66 -2.3 142,377 - EX28DRAFT_0191 0.66 +0.8 142,463 + EX28DRAFT_0191 0.69 -0.3 142,475 + EX28DRAFT_0191 0.69 -0.1 142,476 - EX28DRAFT_0191 0.69 +0.5 142,939 - EX28DRAFT_0191 0.84 +0.3 142,959 + EX28DRAFT_0191 0.84 -0.1 142,959 + EX28DRAFT_0191 0.84 +0.0 142,973 + EX28DRAFT_0191 0.85 +0.8 143,213 + +0.3 143,213 + -0.4 143,213 + -0.5 143,213 + -0.7 143,213 + -1.0 143,214 - +0.6 143,214 - -1.0 143,214 - -1.1 143,214 - +0.1 143,214 - -0.3 143,474 + +0.9 143,475 - +0.3 143,475 - -0.1 143,493 - +0.7 143,544 + +0.4 143,544 + +0.2 143,544 + +0.8 143,581 - +0.3 143,581 - -0.6 143,586 + +0.1 143,587 - -0.3 143,667 - +0.3 143,698 + +0.1 143,713 - +0.1 143,805 - EX28DRAFT_0192 0.13 -0.3 144,435 + EX28DRAFT_0192 0.50 -0.3 144,436 - EX28DRAFT_0192 0.50 -0.1 144,436 - EX28DRAFT_0192 0.50 -1.4
Or see this region's nucleotide sequence