Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0191

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0189 and EX28DRAFT_0190 are separated by 10 nucleotidesEX28DRAFT_0190 and EX28DRAFT_0191 are separated by 556 nucleotidesEX28DRAFT_0191 and EX28DRAFT_0192 are separated by 142 nucleotides EX28DRAFT_0189: EX28DRAFT_0189 - succinyldiaminopimelate desuccinylase (EC 3.5.1.18), at 138,284 to 139,411 _0189 EX28DRAFT_0190: EX28DRAFT_0190 - transcriptional regulator, Spx/MgsR family, at 139,422 to 139,772 _0190 EX28DRAFT_0191: EX28DRAFT_0191 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 140,329 to 143,442 _0191 EX28DRAFT_0192: EX28DRAFT_0192 - Signal transduction histidine kinase, nitrate/nitrite-specific, at 143,585 to 145,279 _0192 Position (kb) 140 141 142 143 144Strain fitness (log2 ratio) -2 -1 0 1 2 3at 139.469 kb on + strand, within EX28DRAFT_0190at 139.470 kb on - strand, within EX28DRAFT_0190at 139.800 kb on + strandat 139.801 kb on - strandat 139.824 kb on - strandat 139.842 kb on + strandat 139.869 kb on - strandat 139.929 kb on - strandat 140.047 kb on + strandat 140.101 kb on + strandat 140.140 kb on + strandat 140.143 kb on + strandat 140.146 kb on + strandat 140.266 kb on - strandat 140.275 kb on + strandat 140.394 kb on - strandat 140.536 kb on + strandat 140.537 kb on - strandat 140.537 kb on - strandat 140.672 kb on + strand, within EX28DRAFT_0191at 140.672 kb on + strand, within EX28DRAFT_0191at 140.673 kb on - strand, within EX28DRAFT_0191at 140.774 kb on + strand, within EX28DRAFT_0191at 140.775 kb on - strand, within EX28DRAFT_0191at 140.934 kb on + strand, within EX28DRAFT_0191at 141.093 kb on + strand, within EX28DRAFT_0191at 141.094 kb on - strand, within EX28DRAFT_0191at 141.134 kb on + strand, within EX28DRAFT_0191at 141.135 kb on - strand, within EX28DRAFT_0191at 141.135 kb on - strand, within EX28DRAFT_0191at 141.162 kb on + strand, within EX28DRAFT_0191at 141.176 kb on + strand, within EX28DRAFT_0191at 141.177 kb on - strand, within EX28DRAFT_0191at 141.177 kb on - strand, within EX28DRAFT_0191at 141.177 kb on - strand, within EX28DRAFT_0191at 141.247 kb on - strand, within EX28DRAFT_0191at 141.472 kb on - strand, within EX28DRAFT_0191at 141.472 kb on - strand, within EX28DRAFT_0191at 141.474 kb on + strand, within EX28DRAFT_0191at 141.475 kb on - strand, within EX28DRAFT_0191at 141.656 kb on + strand, within EX28DRAFT_0191at 141.656 kb on + strand, within EX28DRAFT_0191at 141.656 kb on + strand, within EX28DRAFT_0191at 141.656 kb on + strand, within EX28DRAFT_0191at 141.656 kb on + strand, within EX28DRAFT_0191at 141.657 kb on - strand, within EX28DRAFT_0191at 141.812 kb on + strand, within EX28DRAFT_0191at 141.812 kb on + strand, within EX28DRAFT_0191at 141.813 kb on - strand, within EX28DRAFT_0191at 141.867 kb on - strand, within EX28DRAFT_0191at 142.376 kb on + strand, within EX28DRAFT_0191at 142.376 kb on + strand, within EX28DRAFT_0191at 142.377 kb on - strand, within EX28DRAFT_0191at 142.377 kb on - strand, within EX28DRAFT_0191at 142.463 kb on + strand, within EX28DRAFT_0191at 142.475 kb on + strand, within EX28DRAFT_0191at 142.476 kb on - strand, within EX28DRAFT_0191at 142.939 kb on - strand, within EX28DRAFT_0191at 142.959 kb on + strand, within EX28DRAFT_0191at 142.959 kb on + strand, within EX28DRAFT_0191at 142.973 kb on + strand, within EX28DRAFT_0191at 143.213 kb on + strandat 143.213 kb on + strandat 143.213 kb on + strandat 143.213 kb on + strandat 143.213 kb on + strandat 143.214 kb on - strandat 143.214 kb on - strandat 143.214 kb on - strandat 143.214 kb on - strandat 143.214 kb on - strandat 143.474 kb on + strandat 143.475 kb on - strandat 143.475 kb on - strandat 143.493 kb on - strandat 143.544 kb on + strandat 143.544 kb on + strandat 143.544 kb on + strandat 143.581 kb on - strandat 143.581 kb on - strandat 143.586 kb on + strandat 143.587 kb on - strandat 143.667 kb on - strandat 143.698 kb on + strandat 143.713 kb on - strandat 143.805 kb on - strand, within EX28DRAFT_0192at 144.435 kb on + strand, within EX28DRAFT_0192at 144.436 kb on - strand, within EX28DRAFT_0192at 144.436 kb on - strand, within EX28DRAFT_0192

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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139,469 + EX28DRAFT_0190 0.13 -1.6
139,470 - EX28DRAFT_0190 0.14 -0.2
139,800 + +1.3
139,801 - +0.4
139,824 - -0.8
139,842 + +0.3
139,869 - +0.3
139,929 - -2.5
140,047 + -2.4
140,101 + +0.1
140,140 + -0.9
140,143 + -0.1
140,146 + -0.1
140,266 - -0.1
140,275 + -0.1
140,394 - +1.4
140,536 + -1.2
140,537 - -0.1
140,537 - +0.3
140,672 + EX28DRAFT_0191 0.11 +0.2
140,672 + EX28DRAFT_0191 0.11 -0.1
140,673 - EX28DRAFT_0191 0.11 +0.2
140,774 + EX28DRAFT_0191 0.14 +0.1
140,775 - EX28DRAFT_0191 0.14 -1.2
140,934 + EX28DRAFT_0191 0.19 +2.1
141,093 + EX28DRAFT_0191 0.25 +3.1
141,094 - EX28DRAFT_0191 0.25 +0.3
141,134 + EX28DRAFT_0191 0.26 +0.4
141,135 - EX28DRAFT_0191 0.26 -0.8
141,135 - EX28DRAFT_0191 0.26 -0.2
141,162 + EX28DRAFT_0191 0.27 +0.1
141,176 + EX28DRAFT_0191 0.27 +0.1
141,177 - EX28DRAFT_0191 0.27 -1.2
141,177 - EX28DRAFT_0191 0.27 +0.2
141,177 - EX28DRAFT_0191 0.27 +0.5
141,247 - EX28DRAFT_0191 0.29 +0.2
141,472 - EX28DRAFT_0191 0.37 -0.7
141,472 - EX28DRAFT_0191 0.37 +1.5
141,474 + EX28DRAFT_0191 0.37 +0.5
141,475 - EX28DRAFT_0191 0.37 +0.1
141,656 + EX28DRAFT_0191 0.43 -0.5
141,656 + EX28DRAFT_0191 0.43 +1.1
141,656 + EX28DRAFT_0191 0.43 +1.3
141,656 + EX28DRAFT_0191 0.43 -0.5
141,656 + EX28DRAFT_0191 0.43 +0.3
141,657 - EX28DRAFT_0191 0.43 -0.2
141,812 + EX28DRAFT_0191 0.48 +1.2
141,812 + EX28DRAFT_0191 0.48 -0.8
141,813 - EX28DRAFT_0191 0.48 +0.2
141,867 - EX28DRAFT_0191 0.49 +2.1
142,376 + EX28DRAFT_0191 0.66 -0.3
142,376 + EX28DRAFT_0191 0.66 -0.9
142,377 - EX28DRAFT_0191 0.66 -2.3
142,377 - EX28DRAFT_0191 0.66 +0.8
142,463 + EX28DRAFT_0191 0.69 -0.3
142,475 + EX28DRAFT_0191 0.69 -0.1
142,476 - EX28DRAFT_0191 0.69 +0.5
142,939 - EX28DRAFT_0191 0.84 +0.3
142,959 + EX28DRAFT_0191 0.84 -0.1
142,959 + EX28DRAFT_0191 0.84 +0.0
142,973 + EX28DRAFT_0191 0.85 +0.8
143,213 + +0.3
143,213 + -0.4
143,213 + -0.5
143,213 + -0.7
143,213 + -1.0
143,214 - +0.6
143,214 - -1.0
143,214 - -1.1
143,214 - +0.1
143,214 - -0.3
143,474 + +0.9
143,475 - +0.3
143,475 - -0.1
143,493 - +0.7
143,544 + +0.4
143,544 + +0.2
143,544 + +0.8
143,581 - +0.3
143,581 - -0.6
143,586 + +0.1
143,587 - -0.3
143,667 - +0.3
143,698 + +0.1
143,713 - +0.1
143,805 - EX28DRAFT_0192 0.13 -0.3
144,435 + EX28DRAFT_0192 0.50 -0.3
144,436 - EX28DRAFT_0192 0.50 -0.1
144,436 - EX28DRAFT_0192 0.50 -1.4

Or see this region's nucleotide sequence