Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0157 and EX28DRAFT_0158 are separated by 115 nucleotides EX28DRAFT_0158 and EX28DRAFT_0159 are separated by 10 nucleotides EX28DRAFT_0159 and EX28DRAFT_0160 are separated by 11 nucleotides
EX28DRAFT_0157: EX28DRAFT_0157 - Arabinose efflux permease, at 104,190 to 105,404
_0157
EX28DRAFT_0158: EX28DRAFT_0158 - transcriptional regulator, HxlR family, at 105,520 to 105,963
_0158
EX28DRAFT_0159: EX28DRAFT_0159 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 105,974 to 106,717
_0159
EX28DRAFT_0160: EX28DRAFT_0160 - hypothetical protein, at 106,729 to 107,196
_0160
Position (kb)
105
106 Strain fitness (log2 ratio)
-1
0
1
2 at 104.526 kb on + strand, within EX28DRAFT_0157 at 104.526 kb on + strand, within EX28DRAFT_0157 at 104.532 kb on - strand, within EX28DRAFT_0157 at 104.552 kb on + strand, within EX28DRAFT_0157 at 104.552 kb on + strand, within EX28DRAFT_0157 at 104.955 kb on + strand, within EX28DRAFT_0157 at 104.955 kb on + strand, within EX28DRAFT_0157 at 105.062 kb on + strand, within EX28DRAFT_0157 at 105.150 kb on + strand, within EX28DRAFT_0157 at 105.151 kb on - strand, within EX28DRAFT_0157 at 105.308 kb on - strand at 105.308 kb on - strand at 105.310 kb on + strand at 105.405 kb on - strand at 105.405 kb on - strand at 105.459 kb on + strand at 105.460 kb on - strand at 105.485 kb on + strand at 105.491 kb on + strand at 105.492 kb on - strand at 105.537 kb on - strand at 105.547 kb on + strand at 105.547 kb on + strand at 105.547 kb on + strand at 105.548 kb on - strand at 105.610 kb on - strand, within EX28DRAFT_0158 at 105.722 kb on + strand, within EX28DRAFT_0158 at 105.757 kb on + strand, within EX28DRAFT_0158 at 105.758 kb on - strand, within EX28DRAFT_0158 at 105.758 kb on - strand, within EX28DRAFT_0158 at 105.758 kb on - strand, within EX28DRAFT_0158 at 105.979 kb on + strand at 105.979 kb on + strand at 105.979 kb on + strand at 105.980 kb on - strand at 106.137 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.290 kb on - strand, within EX28DRAFT_0159 at 106.290 kb on - strand, within EX28DRAFT_0159 at 106.310 kb on - strand, within EX28DRAFT_0159 at 106.442 kb on + strand, within EX28DRAFT_0159 at 106.597 kb on + strand, within EX28DRAFT_0159 at 106.651 kb on + strand at 106.701 kb on - strand at 106.816 kb on - strand, within EX28DRAFT_0160 at 106.816 kb on - strand, within EX28DRAFT_0160
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 104,526 + EX28DRAFT_0157 0.28 +0.1 104,526 + EX28DRAFT_0157 0.28 -0.8 104,532 - EX28DRAFT_0157 0.28 -0.2 104,552 + EX28DRAFT_0157 0.30 +0.9 104,552 + EX28DRAFT_0157 0.30 -0.4 104,955 + EX28DRAFT_0157 0.63 +0.5 104,955 + EX28DRAFT_0157 0.63 +0.2 105,062 + EX28DRAFT_0157 0.72 -0.0 105,150 + EX28DRAFT_0157 0.79 +0.4 105,151 - EX28DRAFT_0157 0.79 +0.1 105,308 - -0.2 105,308 - +0.0 105,310 + -1.1 105,405 - +0.4 105,405 - +0.1 105,459 + -1.0 105,460 - -0.4 105,485 + +0.6 105,491 + +0.1 105,492 - +0.4 105,537 - -0.3 105,547 + -1.0 105,547 + +0.0 105,547 + +0.2 105,548 - +2.2 105,610 - EX28DRAFT_0158 0.20 -0.2 105,722 + EX28DRAFT_0158 0.45 +0.2 105,757 + EX28DRAFT_0158 0.53 +0.5 105,758 - EX28DRAFT_0158 0.54 +0.4 105,758 - EX28DRAFT_0158 0.54 -0.0 105,758 - EX28DRAFT_0158 0.54 -0.6 105,979 + -0.9 105,979 + -0.9 105,979 + +0.4 105,980 - -1.2 106,137 + EX28DRAFT_0159 0.22 -0.2 106,289 + EX28DRAFT_0159 0.42 +0.1 106,289 + EX28DRAFT_0159 0.42 +0.2 106,289 + EX28DRAFT_0159 0.42 -0.3 106,289 + EX28DRAFT_0159 0.42 +0.9 106,290 - EX28DRAFT_0159 0.42 +0.6 106,290 - EX28DRAFT_0159 0.42 +0.1 106,310 - EX28DRAFT_0159 0.45 -0.2 106,442 + EX28DRAFT_0159 0.63 -0.2 106,597 + EX28DRAFT_0159 0.84 -0.7 106,651 + -0.8 106,701 - +0.2 106,816 - EX28DRAFT_0160 0.19 -0.1 106,816 - EX28DRAFT_0160 0.19 +1.8
Or see this region's nucleotide sequence