Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0152 and EX28DRAFT_0153 are separated by 8 nucleotides EX28DRAFT_0153 and EX28DRAFT_0154 are separated by 12 nucleotides
EX28DRAFT_0152: EX28DRAFT_0152 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 98,401 to 99,429
_0152
EX28DRAFT_0153: EX28DRAFT_0153 - Predicted dehydrogenases and related proteins, at 99,438 to 100,571
_0153
EX28DRAFT_0154: EX28DRAFT_0154 - Uncharacterized protein conserved in bacteria, at 100,584 to 102,488
_0154
Position (kb) 99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 98.556 kb on + strand, within EX28DRAFT_0152 at 98.587 kb on + strand, within EX28DRAFT_0152 at 98.686 kb on + strand, within EX28DRAFT_0152 at 98.964 kb on + strand, within EX28DRAFT_0152 at 98.965 kb on - strand, within EX28DRAFT_0152 at 98.970 kb on + strand, within EX28DRAFT_0152 at 99.044 kb on - strand, within EX28DRAFT_0152 at 99.116 kb on - strand, within EX28DRAFT_0152 at 99.344 kb on - strand at 99.346 kb on + strand at 99.369 kb on - strand at 99.369 kb on - strand at 99.369 kb on - strand at 99.373 kb on - strand at 99.396 kb on + strand at 99.400 kb on + strand at 99.401 kb on - strand at 99.401 kb on - strand at 99.452 kb on + strand at 99.460 kb on + strand at 99.475 kb on - strand at 99.502 kb on - strand at 99.668 kb on + strand, within EX28DRAFT_0153 at 99.736 kb on - strand, within EX28DRAFT_0153 at 99.831 kb on + strand, within EX28DRAFT_0153 at 99.831 kb on + strand, within EX28DRAFT_0153 at 99.832 kb on - strand, within EX28DRAFT_0153 at 99.832 kb on - strand, within EX28DRAFT_0153 at 99.832 kb on - strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.928 kb on - strand, within EX28DRAFT_0153 at 99.928 kb on - strand, within EX28DRAFT_0153 at 99.928 kb on - strand, within EX28DRAFT_0153 at 99.930 kb on - strand, within EX28DRAFT_0153 at 100.231 kb on - strand, within EX28DRAFT_0153 at 100.231 kb on - strand, within EX28DRAFT_0153 at 100.296 kb on + strand, within EX28DRAFT_0153 at 100.296 kb on + strand, within EX28DRAFT_0153 at 100.297 kb on - strand, within EX28DRAFT_0153 at 100.577 kb on + strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.775 kb on + strand, within EX28DRAFT_0154 at 100.775 kb on + strand, within EX28DRAFT_0154 at 100.775 kb on + strand, within EX28DRAFT_0154 at 100.776 kb on - strand, within EX28DRAFT_0154 at 100.776 kb on - strand, within EX28DRAFT_0154 at 100.776 kb on - strand, within EX28DRAFT_0154 at 100.962 kb on + strand, within EX28DRAFT_0154 at 100.962 kb on + strand, within EX28DRAFT_0154 at 100.962 kb on + strand, within EX28DRAFT_0154 at 100.963 kb on - strand, within EX28DRAFT_0154 at 100.963 kb on - strand, within EX28DRAFT_0154 at 100.963 kb on - strand, within EX28DRAFT_0154 at 100.963 kb on - strand, within EX28DRAFT_0154 at 101.050 kb on - strand, within EX28DRAFT_0154 at 101.050 kb on - strand, within EX28DRAFT_0154 at 101.068 kb on + strand, within EX28DRAFT_0154 at 101.123 kb on - strand, within EX28DRAFT_0154
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 98,556 + EX28DRAFT_0152 0.15 -0.1 98,587 + EX28DRAFT_0152 0.18 +0.3 98,686 + EX28DRAFT_0152 0.28 -0.6 98,964 + EX28DRAFT_0152 0.55 +1.0 98,965 - EX28DRAFT_0152 0.55 -0.0 98,970 + EX28DRAFT_0152 0.55 +0.9 99,044 - EX28DRAFT_0152 0.62 +0.1 99,116 - EX28DRAFT_0152 0.69 +0.7 99,344 - -0.3 99,346 + +1.0 99,369 - +0.3 99,369 - +0.1 99,369 - -0.8 99,373 - +0.3 99,396 + -0.1 99,400 + +0.1 99,401 - +0.2 99,401 - -0.2 99,452 + -0.9 99,460 + -2.8 99,475 - +0.0 99,502 - -0.2 99,668 + EX28DRAFT_0153 0.20 -0.3 99,736 - EX28DRAFT_0153 0.26 -1.0 99,831 + EX28DRAFT_0153 0.35 -0.1 99,831 + EX28DRAFT_0153 0.35 -0.2 99,832 - EX28DRAFT_0153 0.35 +1.2 99,832 - EX28DRAFT_0153 0.35 +0.4 99,832 - EX28DRAFT_0153 0.35 +0.9 99,927 + EX28DRAFT_0153 0.43 -0.2 99,927 + EX28DRAFT_0153 0.43 -0.2 99,927 + EX28DRAFT_0153 0.43 +1.5 99,927 + EX28DRAFT_0153 0.43 +0.2 99,927 + EX28DRAFT_0153 0.43 -0.1 99,927 + EX28DRAFT_0153 0.43 +0.5 99,928 - EX28DRAFT_0153 0.43 -0.5 99,928 - EX28DRAFT_0153 0.43 +0.8 99,928 - EX28DRAFT_0153 0.43 +0.0 99,930 - EX28DRAFT_0153 0.43 +0.5 100,231 - EX28DRAFT_0153 0.70 +0.3 100,231 - EX28DRAFT_0153 0.70 +0.1 100,296 + EX28DRAFT_0153 0.76 -0.4 100,296 + EX28DRAFT_0153 0.76 -0.5 100,297 - EX28DRAFT_0153 0.76 +0.4 100,577 + +0.9 100,636 - -0.2 100,636 - +0.5 100,775 + EX28DRAFT_0154 0.10 +0.6 100,775 + EX28DRAFT_0154 0.10 -0.1 100,775 + EX28DRAFT_0154 0.10 +0.0 100,776 - EX28DRAFT_0154 0.10 -1.2 100,776 - EX28DRAFT_0154 0.10 -0.4 100,776 - EX28DRAFT_0154 0.10 -0.7 100,962 + EX28DRAFT_0154 0.20 -0.8 100,962 + EX28DRAFT_0154 0.20 -0.2 100,962 + EX28DRAFT_0154 0.20 +0.4 100,963 - EX28DRAFT_0154 0.20 +0.2 100,963 - EX28DRAFT_0154 0.20 +0.2 100,963 - EX28DRAFT_0154 0.20 +0.8 100,963 - EX28DRAFT_0154 0.20 -2.0 101,050 - EX28DRAFT_0154 0.24 -2.6 101,050 - EX28DRAFT_0154 0.24 -0.2 101,068 + EX28DRAFT_0154 0.25 +0.5 101,123 - EX28DRAFT_0154 0.28 +0.0
Or see this region's nucleotide sequence