Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21520

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21515 and CA264_21520 are separated by 39 nucleotidesCA264_21520 and CA264_21525 are separated by 156 nucleotides CA264_21515: CA264_21515 - MATE family efflux transporter, at 173,267 to 174,706 _21515 CA264_21520: CA264_21520 - hypothetical protein, at 174,746 to 175,450 _21520 CA264_21525: CA264_21525 - DUF305 domain-containing protein, at 175,607 to 176,320 _21525 Position (kb) 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2 3at 173.756 kb on + strand, within CA264_21515at 173.757 kb on - strand, within CA264_21515at 173.757 kb on - strand, within CA264_21515at 173.771 kb on + strand, within CA264_21515at 173.771 kb on + strand, within CA264_21515at 173.772 kb on - strand, within CA264_21515at 173.795 kb on - strand, within CA264_21515at 173.824 kb on + strand, within CA264_21515at 173.826 kb on + strand, within CA264_21515at 173.827 kb on - strand, within CA264_21515at 173.904 kb on + strand, within CA264_21515at 173.934 kb on - strand, within CA264_21515at 173.962 kb on + strand, within CA264_21515at 174.040 kb on - strand, within CA264_21515at 174.042 kb on + strand, within CA264_21515at 174.136 kb on + strand, within CA264_21515at 174.144 kb on + strand, within CA264_21515at 174.175 kb on + strand, within CA264_21515at 174.176 kb on - strand, within CA264_21515at 174.293 kb on + strand, within CA264_21515at 174.302 kb on + strand, within CA264_21515at 174.303 kb on - strand, within CA264_21515at 174.303 kb on - strand, within CA264_21515at 174.395 kb on - strand, within CA264_21515at 174.395 kb on - strand, within CA264_21515at 174.479 kb on + strand, within CA264_21515at 174.501 kb on + strand, within CA264_21515at 174.502 kb on - strand, within CA264_21515at 174.590 kb on - strandat 174.612 kb on - strandat 174.614 kb on + strandat 174.653 kb on - strandat 174.683 kb on + strandat 174.686 kb on + strandat 174.686 kb on + strandat 174.686 kb on + strandat 174.713 kb on + strandat 174.714 kb on - strandat 174.714 kb on - strandat 174.714 kb on - strandat 174.714 kb on - strandat 174.726 kb on - strandat 174.801 kb on + strandat 174.801 kb on + strandat 174.802 kb on - strandat 174.811 kb on + strandat 174.813 kb on + strandat 174.813 kb on + strandat 174.814 kb on - strandat 174.815 kb on + strandat 174.815 kb on + strandat 174.815 kb on + strandat 174.869 kb on - strand, within CA264_21520at 174.925 kb on - strand, within CA264_21520at 174.935 kb on - strand, within CA264_21520at 174.949 kb on + strand, within CA264_21520at 174.984 kb on - strand, within CA264_21520at 174.998 kb on + strand, within CA264_21520at 174.999 kb on - strand, within CA264_21520at 174.999 kb on - strand, within CA264_21520at 175.104 kb on + strand, within CA264_21520at 175.182 kb on - strand, within CA264_21520at 175.183 kb on + strand, within CA264_21520at 175.184 kb on - strand, within CA264_21520at 175.184 kb on - strand, within CA264_21520at 175.191 kb on + strand, within CA264_21520at 175.300 kb on + strand, within CA264_21520at 175.322 kb on + strand, within CA264_21520at 175.322 kb on + strand, within CA264_21520at 175.384 kb on + strandat 175.384 kb on + strandat 175.385 kb on - strandat 175.385 kb on - strandat 175.385 kb on - strandat 175.420 kb on - strandat 175.420 kb on - strandat 175.441 kb on + strandat 175.450 kb on + strandat 175.467 kb on - strandat 175.469 kb on + strandat 175.470 kb on - strandat 175.470 kb on - strandat 175.471 kb on + strandat 175.471 kb on + strandat 175.471 kb on + strandat 175.471 kb on + strandat 175.471 kb on + strandat 175.540 kb on - strandat 175.583 kb on + strandat 175.609 kb on - strandat 175.668 kb on - strandat 175.691 kb on + strand, within CA264_21525at 175.692 kb on - strand, within CA264_21525at 175.819 kb on + strand, within CA264_21525at 175.820 kb on - strand, within CA264_21525at 175.880 kb on - strand, within CA264_21525at 175.888 kb on + strand, within CA264_21525at 175.919 kb on - strand, within CA264_21525at 175.944 kb on - strand, within CA264_21525at 176.017 kb on - strand, within CA264_21525at 176.042 kb on + strand, within CA264_21525at 176.220 kb on - strand, within CA264_21525at 176.228 kb on - strand, within CA264_21525at 176.328 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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173,756 + CA264_21515 0.34 -0.1
173,757 - CA264_21515 0.34 +0.9
173,757 - CA264_21515 0.34 +0.1
173,771 + CA264_21515 0.35 -0.2
173,771 + CA264_21515 0.35 +0.5
173,772 - CA264_21515 0.35 -0.6
173,795 - CA264_21515 0.37 -0.7
173,824 + CA264_21515 0.39 -1.0
173,826 + CA264_21515 0.39 +0.3
173,827 - CA264_21515 0.39 -0.4
173,904 + CA264_21515 0.44 +0.0
173,934 - CA264_21515 0.46 -0.4
173,962 + CA264_21515 0.48 +0.6
174,040 - CA264_21515 0.54 -0.3
174,042 + CA264_21515 0.54 -0.9
174,136 + CA264_21515 0.60 +0.3
174,144 + CA264_21515 0.61 -0.9
174,175 + CA264_21515 0.63 -1.2
174,176 - CA264_21515 0.63 -1.6
174,293 + CA264_21515 0.71 +0.1
174,302 + CA264_21515 0.72 +1.1
174,303 - CA264_21515 0.72 -1.2
174,303 - CA264_21515 0.72 -1.3
174,395 - CA264_21515 0.78 -0.5
174,395 - CA264_21515 0.78 -0.1
174,479 + CA264_21515 0.84 +0.4
174,501 + CA264_21515 0.86 +0.1
174,502 - CA264_21515 0.86 +0.0
174,590 - -0.5
174,612 - +0.1
174,614 + +3.2
174,653 - -0.1
174,683 + -0.8
174,686 + +1.1
174,686 + +0.2
174,686 + +0.1
174,713 + +0.1
174,714 - +0.1
174,714 - +0.7
174,714 - -0.5
174,714 - -0.5
174,726 - -0.6
174,801 + +0.6
174,801 + -0.6
174,802 - -0.5
174,811 + -0.5
174,813 + -0.5
174,813 + -0.5
174,814 - +0.5
174,815 + +1.5
174,815 + +0.1
174,815 + +0.0
174,869 - CA264_21520 0.17 -0.3
174,925 - CA264_21520 0.25 -0.1
174,935 - CA264_21520 0.27 -0.7
174,949 + CA264_21520 0.29 -0.2
174,984 - CA264_21520 0.34 -0.3
174,998 + CA264_21520 0.36 -1.7
174,999 - CA264_21520 0.36 -0.6
174,999 - CA264_21520 0.36 -0.5
175,104 + CA264_21520 0.51 -1.2
175,182 - CA264_21520 0.62 -0.5
175,183 + CA264_21520 0.62 -0.6
175,184 - CA264_21520 0.62 +0.7
175,184 - CA264_21520 0.62 -0.1
175,191 + CA264_21520 0.63 +0.1
175,300 + CA264_21520 0.79 -0.1
175,322 + CA264_21520 0.82 -0.2
175,322 + CA264_21520 0.82 +0.1
175,384 + -0.2
175,384 + +0.8
175,385 - -0.5
175,385 - +0.1
175,385 - -0.4
175,420 - -0.4
175,420 - -0.2
175,441 + -0.3
175,450 + -0.0
175,467 - -0.9
175,469 + -0.3
175,470 - -0.3
175,470 - -0.0
175,471 + +1.2
175,471 + +0.1
175,471 + +2.9
175,471 + -0.4
175,471 + -1.0
175,540 - +0.7
175,583 + -0.4
175,609 - -0.6
175,668 - -0.3
175,691 + CA264_21525 0.12 +0.3
175,692 - CA264_21525 0.12 +0.2
175,819 + CA264_21525 0.30 -1.1
175,820 - CA264_21525 0.30 +0.0
175,880 - CA264_21525 0.38 -2.0
175,888 + CA264_21525 0.39 -0.1
175,919 - CA264_21525 0.44 -0.2
175,944 - CA264_21525 0.47 -0.0
176,017 - CA264_21525 0.57 -0.2
176,042 + CA264_21525 0.61 -1.3
176,220 - CA264_21525 0.86 -0.9
176,228 - CA264_21525 0.87 -0.1
176,328 - -0.6

Or see this region's nucleotide sequence