Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20845

Experiment: m.b. nitrite 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_20840 and CA264_20845 are separated by 134 nucleotidesCA264_20845 and CA264_20850 are separated by 47 nucleotidesCA264_20850 and CA264_20855 are separated by 21 nucleotides CA264_20840: CA264_20840 - hypothetical protein, at 28,032 to 29,390 _20840 CA264_20845: CA264_20845 - hypothetical protein, at 29,525 to 29,764 _20845 CA264_20850: CA264_20850 - DsbA family protein, at 29,812 to 30,618 _20850 CA264_20855: CA264_20855 - manganese catalase, at 30,640 to 31,584 _20855 Position (kb) 29 30Strain fitness (log2 ratio) -1 0 1at 28.616 kb on - strand, within CA264_20840at 28.616 kb on - strand, within CA264_20840at 28.763 kb on - strand, within CA264_20840at 28.774 kb on - strand, within CA264_20840at 28.825 kb on + strand, within CA264_20840at 28.825 kb on + strand, within CA264_20840at 28.825 kb on + strand, within CA264_20840at 28.825 kb on + strand, within CA264_20840at 28.826 kb on - strand, within CA264_20840at 28.826 kb on - strand, within CA264_20840at 28.826 kb on - strand, within CA264_20840at 28.826 kb on - strand, within CA264_20840at 28.827 kb on + strand, within CA264_20840at 28.832 kb on - strand, within CA264_20840at 28.851 kb on + strand, within CA264_20840at 28.876 kb on + strand, within CA264_20840at 28.891 kb on + strand, within CA264_20840at 28.892 kb on - strand, within CA264_20840at 28.892 kb on - strand, within CA264_20840at 28.951 kb on + strand, within CA264_20840at 28.951 kb on + strand, within CA264_20840at 28.951 kb on + strand, within CA264_20840at 28.970 kb on + strand, within CA264_20840at 29.014 kb on + strand, within CA264_20840at 29.017 kb on + strand, within CA264_20840at 29.043 kb on - strand, within CA264_20840at 29.142 kb on + strand, within CA264_20840at 29.143 kb on - strand, within CA264_20840at 29.167 kb on - strand, within CA264_20840at 29.176 kb on - strand, within CA264_20840at 29.176 kb on - strand, within CA264_20840at 29.342 kb on - strandat 29.342 kb on - strandat 29.352 kb on + strandat 29.353 kb on - strandat 29.353 kb on - strandat 29.365 kb on - strandat 29.365 kb on - strandat 29.397 kb on - strandat 29.615 kb on + strand, within CA264_20845at 29.616 kb on - strand, within CA264_20845at 29.679 kb on - strand, within CA264_20845at 29.803 kb on - strandat 29.883 kb on - strandat 29.910 kb on + strand, within CA264_20850at 29.918 kb on - strand, within CA264_20850at 29.948 kb on - strand, within CA264_20850at 29.970 kb on - strand, within CA264_20850at 30.024 kb on + strand, within CA264_20850at 30.025 kb on - strand, within CA264_20850at 30.067 kb on + strand, within CA264_20850at 30.074 kb on - strand, within CA264_20850at 30.127 kb on + strand, within CA264_20850at 30.128 kb on - strand, within CA264_20850at 30.218 kb on - strand, within CA264_20850at 30.243 kb on - strand, within CA264_20850at 30.243 kb on - strand, within CA264_20850at 30.303 kb on - strand, within CA264_20850at 30.361 kb on - strand, within CA264_20850at 30.361 kb on - strand, within CA264_20850at 30.417 kb on + strand, within CA264_20850at 30.417 kb on + strand, within CA264_20850at 30.418 kb on - strand, within CA264_20850at 30.429 kb on - strand, within CA264_20850at 30.447 kb on + strand, within CA264_20850at 30.555 kb on - strandat 30.558 kb on - strandat 30.558 kb on - strandat 30.562 kb on + strandat 30.563 kb on - strandat 30.595 kb on + strandat 30.595 kb on + strandat 30.621 kb on + strandat 30.621 kb on + strandat 30.621 kb on + strandat 30.622 kb on - strandat 30.622 kb on - strandat 30.628 kb on + strandat 30.628 kb on + strandat 30.641 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
remove
28,616 - CA264_20840 0.43 -0.5
28,616 - CA264_20840 0.43 -0.7
28,763 - CA264_20840 0.54 +0.5
28,774 - CA264_20840 0.55 +0.1
28,825 + CA264_20840 0.58 +0.1
28,825 + CA264_20840 0.58 +0.9
28,825 + CA264_20840 0.58 -0.3
28,825 + CA264_20840 0.58 +1.0
28,826 - CA264_20840 0.58 +0.9
28,826 - CA264_20840 0.58 +1.5
28,826 - CA264_20840 0.58 -0.2
28,826 - CA264_20840 0.58 -0.7
28,827 + CA264_20840 0.58 +0.8
28,832 - CA264_20840 0.59 -0.7
28,851 + CA264_20840 0.60 -1.6
28,876 + CA264_20840 0.62 -0.4
28,891 + CA264_20840 0.63 +0.8
28,892 - CA264_20840 0.63 -0.2
28,892 - CA264_20840 0.63 -0.4
28,951 + CA264_20840 0.68 +0.2
28,951 + CA264_20840 0.68 -0.2
28,951 + CA264_20840 0.68 +0.2
28,970 + CA264_20840 0.69 -0.3
29,014 + CA264_20840 0.72 +0.5
29,017 + CA264_20840 0.72 +0.1
29,043 - CA264_20840 0.74 +0.4
29,142 + CA264_20840 0.82 +0.5
29,143 - CA264_20840 0.82 -0.2
29,167 - CA264_20840 0.84 +0.3
29,176 - CA264_20840 0.84 -0.1
29,176 - CA264_20840 0.84 -0.1
29,342 - -0.9
29,342 - +0.9
29,352 + +0.2
29,353 - +0.1
29,353 - +0.3
29,365 - -0.3
29,365 - -0.7
29,397 - +0.0
29,615 + CA264_20845 0.38 +0.9
29,616 - CA264_20845 0.38 +0.6
29,679 - CA264_20845 0.64 -0.8
29,803 - -0.6
29,883 - -0.3
29,910 + CA264_20850 0.12 -0.8
29,918 - CA264_20850 0.13 -0.5
29,948 - CA264_20850 0.17 -0.1
29,970 - CA264_20850 0.20 -0.7
30,024 + CA264_20850 0.26 -0.7
30,025 - CA264_20850 0.26 -0.3
30,067 + CA264_20850 0.32 -1.7
30,074 - CA264_20850 0.32 -0.3
30,127 + CA264_20850 0.39 +0.5
30,128 - CA264_20850 0.39 -0.4
30,218 - CA264_20850 0.50 +0.6
30,243 - CA264_20850 0.53 -0.9
30,243 - CA264_20850 0.53 -0.6
30,303 - CA264_20850 0.61 -1.1
30,361 - CA264_20850 0.68 +0.3
30,361 - CA264_20850 0.68 -1.0
30,417 + CA264_20850 0.75 -0.5
30,417 + CA264_20850 0.75 -1.0
30,418 - CA264_20850 0.75 -1.1
30,429 - CA264_20850 0.76 -0.7
30,447 + CA264_20850 0.79 -0.5
30,555 - +0.3
30,558 - -0.0
30,558 - -0.9
30,562 + +1.0
30,563 - -0.9
30,595 + -0.1
30,595 + -0.9
30,621 + +0.1
30,621 + +0.3
30,621 + -0.1
30,622 - -1.2
30,622 - +0.4
30,628 + +0.2
30,628 + +0.7
30,641 + +0.2

Or see this region's nucleotide sequence