Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02685

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02675 and CA264_02680 are separated by 190 nucleotidesCA264_02680 and CA264_02685 overlap by 11 nucleotidesCA264_02685 and CA264_02690 are separated by 71 nucleotidesCA264_02690 and CA264_02695 overlap by 14 nucleotides CA264_02675: CA264_02675 - succinate-semialdehyde dehydrogenase, at 618,860 to 620,224 _02675 CA264_02680: CA264_02680 - RNA polymerase subunit sigma-70, at 620,415 to 620,972 _02680 CA264_02685: CA264_02685 - hypothetical protein, at 620,962 to 621,777 _02685 CA264_02690: CA264_02690 - rhodanese, at 621,849 to 622,328 _02690 CA264_02695: CA264_02695 - glycosyltransferase, at 622,315 to 622,911 _02695 Position (kb) 620 621 622Strain fitness (log2 ratio) -2 -1 0 1at 620.074 kb on + strand, within CA264_02675at 620.074 kb on + strand, within CA264_02675at 620.075 kb on - strand, within CA264_02675at 620.151 kb on - strandat 620.173 kb on + strandat 620.216 kb on + strandat 620.248 kb on + strandat 620.249 kb on - strandat 620.249 kb on - strandat 620.249 kb on - strandat 620.249 kb on - strandat 620.249 kb on - strandat 620.252 kb on + strandat 620.268 kb on + strandat 620.268 kb on + strandat 620.270 kb on + strandat 620.271 kb on - strandat 620.339 kb on - strandat 620.346 kb on + strandat 620.347 kb on - strandat 620.353 kb on - strandat 620.353 kb on - strandat 620.359 kb on + strandat 620.360 kb on - strandat 620.511 kb on + strand, within CA264_02680at 620.667 kb on - strand, within CA264_02680at 620.765 kb on + strand, within CA264_02680at 620.847 kb on + strand, within CA264_02680at 620.886 kb on + strand, within CA264_02680at 620.933 kb on + strandat 620.934 kb on - strandat 620.980 kb on + strandat 620.980 kb on + strandat 620.984 kb on + strandat 621.169 kb on - strand, within CA264_02685at 621.180 kb on - strand, within CA264_02685at 621.393 kb on + strand, within CA264_02685at 621.394 kb on - strand, within CA264_02685at 621.457 kb on + strand, within CA264_02685at 621.457 kb on + strand, within CA264_02685at 621.458 kb on - strand, within CA264_02685at 621.459 kb on + strand, within CA264_02685at 621.539 kb on + strand, within CA264_02685at 621.540 kb on - strand, within CA264_02685at 621.542 kb on - strand, within CA264_02685at 621.635 kb on + strand, within CA264_02685at 621.636 kb on - strand, within CA264_02685at 621.636 kb on - strand, within CA264_02685at 621.642 kb on - strand, within CA264_02685at 621.751 kb on + strandat 621.751 kb on + strandat 621.832 kb on + strandat 621.836 kb on + strandat 621.859 kb on + strandat 621.892 kb on - strandat 622.015 kb on - strand, within CA264_02690at 622.015 kb on - strand, within CA264_02690at 622.022 kb on - strand, within CA264_02690at 622.022 kb on - strand, within CA264_02690at 622.113 kb on + strand, within CA264_02690at 622.114 kb on - strand, within CA264_02690at 622.156 kb on + strand, within CA264_02690at 622.157 kb on - strand, within CA264_02690at 622.173 kb on - strand, within CA264_02690at 622.180 kb on + strand, within CA264_02690at 622.180 kb on + strand, within CA264_02690at 622.181 kb on - strand, within CA264_02690at 622.270 kb on - strand, within CA264_02690at 622.270 kb on - strand, within CA264_02690at 622.312 kb on + strandat 622.312 kb on + strandat 622.313 kb on - strandat 622.313 kb on - strandat 622.327 kb on - strandat 622.331 kb on + strandat 622.420 kb on + strand, within CA264_02695at 622.421 kb on - strand, within CA264_02695at 622.421 kb on - strand, within CA264_02695at 622.421 kb on - strand, within CA264_02695at 622.424 kb on + strand, within CA264_02695at 622.424 kb on + strand, within CA264_02695at 622.425 kb on - strand, within CA264_02695at 622.483 kb on + strand, within CA264_02695at 622.486 kb on + strand, within CA264_02695at 622.487 kb on - strand, within CA264_02695at 622.499 kb on + strand, within CA264_02695at 622.531 kb on + strand, within CA264_02695at 622.660 kb on - strand, within CA264_02695at 622.663 kb on - strand, within CA264_02695at 622.663 kb on - strand, within CA264_02695at 622.663 kb on - strand, within CA264_02695at 622.685 kb on + strand, within CA264_02695at 622.730 kb on - strand, within CA264_02695at 622.733 kb on - strand, within CA264_02695

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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620,074 + CA264_02675 0.89 -1.0
620,074 + CA264_02675 0.89 -0.9
620,075 - CA264_02675 0.89 -0.7
620,151 - +0.9
620,173 + -1.1
620,216 + -0.0
620,248 + -0.1
620,249 - +0.4
620,249 - -0.3
620,249 - -0.1
620,249 - -0.5
620,249 - +0.1
620,252 + -1.0
620,268 + +0.6
620,268 + -0.0
620,270 + +0.2
620,271 - -0.8
620,339 - +0.8
620,346 + +0.6
620,347 - +0.2
620,353 - +0.5
620,353 - +0.3
620,359 + -0.4
620,360 - -0.1
620,511 + CA264_02680 0.17 -2.1
620,667 - CA264_02680 0.45 -1.3
620,765 + CA264_02680 0.63 -0.2
620,847 + CA264_02680 0.77 +0.0
620,886 + CA264_02680 0.84 -0.4
620,933 + -0.3
620,934 - -0.8
620,980 + -1.3
620,980 + +0.4
620,984 + -0.7
621,169 - CA264_02685 0.25 +0.0
621,180 - CA264_02685 0.27 +0.6
621,393 + CA264_02685 0.53 +0.6
621,394 - CA264_02685 0.53 +0.6
621,457 + CA264_02685 0.61 +0.0
621,457 + CA264_02685 0.61 -0.6
621,458 - CA264_02685 0.61 +0.1
621,459 + CA264_02685 0.61 +0.6
621,539 + CA264_02685 0.71 +0.5
621,540 - CA264_02685 0.71 +0.5
621,542 - CA264_02685 0.71 +1.5
621,635 + CA264_02685 0.82 -0.3
621,636 - CA264_02685 0.83 +0.5
621,636 - CA264_02685 0.83 +0.2
621,642 - CA264_02685 0.83 -0.0
621,751 + +0.2
621,751 + -0.1
621,832 + +0.9
621,836 + +1.4
621,859 + +0.6
621,892 - +0.3
622,015 - CA264_02690 0.35 +0.7
622,015 - CA264_02690 0.35 +0.3
622,022 - CA264_02690 0.36 +0.4
622,022 - CA264_02690 0.36 +0.3
622,113 + CA264_02690 0.55 +1.0
622,114 - CA264_02690 0.55 +0.3
622,156 + CA264_02690 0.64 +0.6
622,157 - CA264_02690 0.64 +0.1
622,173 - CA264_02690 0.68 -1.0
622,180 + CA264_02690 0.69 +0.0
622,180 + CA264_02690 0.69 -0.8
622,181 - CA264_02690 0.69 +0.4
622,270 - CA264_02690 0.88 -0.3
622,270 - CA264_02690 0.88 +0.4
622,312 + -0.2
622,312 + -0.1
622,313 - -0.5
622,313 - +0.5
622,327 - +0.0
622,331 + -0.3
622,420 + CA264_02695 0.18 -2.0
622,421 - CA264_02695 0.18 -0.1
622,421 - CA264_02695 0.18 +1.2
622,421 - CA264_02695 0.18 +0.7
622,424 + CA264_02695 0.18 -0.4
622,424 + CA264_02695 0.18 -1.1
622,425 - CA264_02695 0.18 -0.2
622,483 + CA264_02695 0.28 -0.4
622,486 + CA264_02695 0.29 +0.1
622,487 - CA264_02695 0.29 +0.3
622,499 + CA264_02695 0.31 +0.7
622,531 + CA264_02695 0.36 -0.8
622,660 - CA264_02695 0.58 -0.3
622,663 - CA264_02695 0.58 -0.3
622,663 - CA264_02695 0.58 -0.4
622,663 - CA264_02695 0.58 +0.5
622,685 + CA264_02695 0.62 -0.2
622,730 - CA264_02695 0.70 -0.1
622,733 - CA264_02695 0.70 -0.6

Or see this region's nucleotide sequence