Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01055 and CA264_01060 are separated by 269 nucleotides CA264_01060 and CA264_01065 are separated by 153 nucleotides CA264_01065 and CA264_01070 are separated by 39 nucleotides
CA264_01055: CA264_01055 - dicarboxylate/amino acid:cation symporter, at 232,004 to 233,440
_01055
CA264_01060: CA264_01060 - hypothetical protein, at 233,710 to 234,744
_01060
CA264_01065: CA264_01065 - MarR family transcriptional regulator, at 234,898 to 235,347
_01065
CA264_01070: CA264_01070 - lipid-binding protein, at 235,387 to 236,046
_01070
Position (kb) 233
234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 232.982 kb on + strand, within CA264_01055 at 233.024 kb on + strand, within CA264_01055 at 233.058 kb on + strand, within CA264_01055 at 233.162 kb on - strand, within CA264_01055 at 233.162 kb on - strand, within CA264_01055 at 233.292 kb on + strand, within CA264_01055 at 233.356 kb on + strand at 233.365 kb on - strand at 233.381 kb on - strand at 233.441 kb on - strand at 233.560 kb on - strand at 233.560 kb on - strand at 233.572 kb on - strand at 233.573 kb on + strand at 233.574 kb on - strand at 233.614 kb on - strand at 233.652 kb on + strand at 233.652 kb on + strand at 233.653 kb on - strand at 233.696 kb on - strand at 233.752 kb on + strand at 233.772 kb on - strand at 233.865 kb on + strand, within CA264_01060 at 233.866 kb on - strand, within CA264_01060 at 233.870 kb on - strand, within CA264_01060 at 233.870 kb on - strand, within CA264_01060 at 233.938 kb on + strand, within CA264_01060 at 233.938 kb on + strand, within CA264_01060 at 234.052 kb on + strand, within CA264_01060 at 234.052 kb on + strand, within CA264_01060 at 234.062 kb on - strand, within CA264_01060 at 234.209 kb on - strand, within CA264_01060 at 234.219 kb on - strand, within CA264_01060 at 234.251 kb on + strand, within CA264_01060 at 234.274 kb on - strand, within CA264_01060 at 234.343 kb on - strand, within CA264_01060 at 234.513 kb on + strand, within CA264_01060 at 234.514 kb on - strand, within CA264_01060 at 234.514 kb on - strand, within CA264_01060 at 234.539 kb on + strand, within CA264_01060 at 234.549 kb on - strand, within CA264_01060 at 234.733 kb on + strand at 234.743 kb on - strand at 234.783 kb on + strand at 234.906 kb on - strand at 234.955 kb on + strand, within CA264_01065 at 234.972 kb on + strand, within CA264_01065 at 235.039 kb on + strand, within CA264_01065 at 235.054 kb on - strand, within CA264_01065 at 235.356 kb on + strand at 235.356 kb on + strand at 235.359 kb on - strand at 235.359 kb on - strand at 235.374 kb on + strand at 235.380 kb on - strand at 235.380 kb on - strand at 235.442 kb on - strand at 235.482 kb on + strand, within CA264_01070 at 235.482 kb on + strand, within CA264_01070 at 235.482 kb on + strand, within CA264_01070 at 235.483 kb on - strand, within CA264_01070 at 235.516 kb on + strand, within CA264_01070 at 235.516 kb on + strand, within CA264_01070 at 235.519 kb on - strand, within CA264_01070 at 235.523 kb on + strand, within CA264_01070 at 235.524 kb on - strand, within CA264_01070 at 235.697 kb on - strand, within CA264_01070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 232,982 + CA264_01055 0.68 -1.6 233,024 + CA264_01055 0.71 -1.3 233,058 + CA264_01055 0.73 -0.5 233,162 - CA264_01055 0.81 -0.5 233,162 - CA264_01055 0.81 -0.9 233,292 + CA264_01055 0.90 -1.4 233,356 + -1.1 233,365 - -2.1 233,381 - +0.2 233,441 - -0.4 233,560 - -0.3 233,560 - +0.9 233,572 - +1.0 233,573 + -2.3 233,574 - +0.3 233,614 - -0.6 233,652 + -3.3 233,652 + +0.3 233,653 - +0.1 233,696 - -1.3 233,752 + -2.1 233,772 - -0.5 233,865 + CA264_01060 0.15 -0.9 233,866 - CA264_01060 0.15 -0.9 233,870 - CA264_01060 0.15 +2.0 233,870 - CA264_01060 0.15 +0.5 233,938 + CA264_01060 0.22 +0.3 233,938 + CA264_01060 0.22 -2.0 234,052 + CA264_01060 0.33 -1.3 234,052 + CA264_01060 0.33 -0.6 234,062 - CA264_01060 0.34 -0.1 234,209 - CA264_01060 0.48 +0.3 234,219 - CA264_01060 0.49 -0.1 234,251 + CA264_01060 0.52 -1.5 234,274 - CA264_01060 0.54 -1.0 234,343 - CA264_01060 0.61 -0.4 234,513 + CA264_01060 0.78 -1.3 234,514 - CA264_01060 0.78 -0.7 234,514 - CA264_01060 0.78 -1.1 234,539 + CA264_01060 0.80 -1.8 234,549 - CA264_01060 0.81 -1.0 234,733 + -1.5 234,743 - +0.8 234,783 + -2.3 234,906 - +0.2 234,955 + CA264_01065 0.13 +0.5 234,972 + CA264_01065 0.16 +0.9 235,039 + CA264_01065 0.31 +0.3 235,054 - CA264_01065 0.35 +1.1 235,356 + -0.6 235,356 + +0.4 235,359 - +0.5 235,359 - +0.1 235,374 + -0.3 235,380 - +0.1 235,380 - -0.1 235,442 - -0.5 235,482 + CA264_01070 0.14 -0.3 235,482 + CA264_01070 0.14 -0.6 235,482 + CA264_01070 0.14 +1.4 235,483 - CA264_01070 0.15 -0.1 235,516 + CA264_01070 0.20 -0.5 235,516 + CA264_01070 0.20 +0.5 235,519 - CA264_01070 0.20 -0.1 235,523 + CA264_01070 0.21 -0.7 235,524 - CA264_01070 0.21 -0.5 235,697 - CA264_01070 0.47 +0.9
Or see this region's nucleotide sequence