Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18695 and ABIE41_RS18700 are separated by 226 nucleotides ABIE41_RS18700 and ABIE41_RS18705 are separated by 165 nucleotides ABIE41_RS18705 and ABIE41_RS18710 are separated by 47 nucleotides
ABIE41_RS18695: ABIE41_RS18695 - flagellar biosynthesis protein FlgA, at 3,848,853 to 3,850,256
_RS18695
ABIE41_RS18700: ABIE41_RS18700 - hypothetical protein, at 3,850,483 to 3,850,836
_RS18700
ABIE41_RS18705: ABIE41_RS18705 - amidohydrolase family protein, at 3,851,002 to 3,851,283
_RS18705
ABIE41_RS18710: ABIE41_RS18710 - TRAP transporter substrate-binding protein, at 3,851,331 to 3,852,338
_RS18710
Position (kb)
3851
3852 Strain fitness (log2 ratio)
-2
-1
0
1 at 3850.237 kb on + strand at 3850.237 kb on + strand at 3850.238 kb on - strand at 3850.332 kb on + strand at 3850.332 kb on + strand at 3850.333 kb on - strand at 3850.348 kb on + strand at 3850.348 kb on + strand at 3850.348 kb on + strand at 3850.348 kb on + strand at 3850.348 kb on + strand at 3850.349 kb on - strand at 3850.349 kb on - strand at 3850.482 kb on + strand at 3850.482 kb on + strand at 3850.482 kb on + strand at 3850.482 kb on + strand at 3850.483 kb on - strand at 3850.528 kb on + strand, within ABIE41_RS18700 at 3850.528 kb on + strand, within ABIE41_RS18700 at 3851.037 kb on + strand, within ABIE41_RS18705 at 3851.037 kb on + strand, within ABIE41_RS18705 at 3851.038 kb on - strand, within ABIE41_RS18705 at 3851.226 kb on + strand, within ABIE41_RS18705 at 3851.226 kb on + strand, within ABIE41_RS18705 at 3851.226 kb on + strand, within ABIE41_RS18705 at 3851.227 kb on - strand, within ABIE41_RS18705 at 3851.272 kb on + strand at 3851.272 kb on + strand at 3851.272 kb on + strand at 3851.273 kb on - strand at 3851.273 kb on - strand at 3851.281 kb on + strand at 3851.281 kb on + strand at 3851.282 kb on - strand at 3851.282 kb on - strand at 3851.282 kb on - strand at 3851.472 kb on + strand, within ABIE41_RS18710 at 3851.473 kb on - strand, within ABIE41_RS18710 at 3851.473 kb on - strand, within ABIE41_RS18710 at 3851.473 kb on - strand, within ABIE41_RS18710 at 3851.674 kb on - strand, within ABIE41_RS18710 at 3851.788 kb on - strand, within ABIE41_RS18710 at 3851.826 kb on + strand, within ABIE41_RS18710 at 3851.826 kb on + strand, within ABIE41_RS18710 at 3851.826 kb on + strand, within ABIE41_RS18710 at 3851.827 kb on - strand, within ABIE41_RS18710 at 3851.827 kb on - strand, within ABIE41_RS18710 at 3852.013 kb on - strand, within ABIE41_RS18710 at 3852.013 kb on - strand, within ABIE41_RS18710 at 3852.013 kb on - strand, within ABIE41_RS18710 at 3852.116 kb on + strand, within ABIE41_RS18710
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 3,850,237 + +0.4 3,850,237 + +0.6 3,850,238 - +0.4 3,850,332 + -0.2 3,850,332 + +0.3 3,850,333 - -0.1 3,850,348 + -2.3 3,850,348 + +1.1 3,850,348 + -0.1 3,850,348 + +0.9 3,850,348 + +0.8 3,850,349 - +0.3 3,850,349 - +0.1 3,850,482 + -1.5 3,850,482 + -0.6 3,850,482 + -1.9 3,850,482 + +0.3 3,850,483 - -0.5 3,850,528 + ABIE41_RS18700 0.13 -1.5 3,850,528 + ABIE41_RS18700 0.13 +0.8 3,851,037 + ABIE41_RS18705 0.12 +0.1 3,851,037 + ABIE41_RS18705 0.12 +0.3 3,851,038 - ABIE41_RS18705 0.13 -0.4 3,851,226 + ABIE41_RS18705 0.79 +0.5 3,851,226 + ABIE41_RS18705 0.79 +0.1 3,851,226 + ABIE41_RS18705 0.79 +0.1 3,851,227 - ABIE41_RS18705 0.80 -1.0 3,851,272 + -1.4 3,851,272 + -0.0 3,851,272 + -0.7 3,851,273 - -0.4 3,851,273 - +0.6 3,851,281 + -2.0 3,851,281 + -1.2 3,851,282 - +1.3 3,851,282 - -0.4 3,851,282 - -0.4 3,851,472 + ABIE41_RS18710 0.14 +0.9 3,851,473 - ABIE41_RS18710 0.14 -0.6 3,851,473 - ABIE41_RS18710 0.14 -0.3 3,851,473 - ABIE41_RS18710 0.14 +0.5 3,851,674 - ABIE41_RS18710 0.34 +0.3 3,851,788 - ABIE41_RS18710 0.45 -0.5 3,851,826 + ABIE41_RS18710 0.49 +1.3 3,851,826 + ABIE41_RS18710 0.49 -0.4 3,851,826 + ABIE41_RS18710 0.49 +0.7 3,851,827 - ABIE41_RS18710 0.49 +0.2 3,851,827 - ABIE41_RS18710 0.49 -0.0 3,852,013 - ABIE41_RS18710 0.68 -0.1 3,852,013 - ABIE41_RS18710 0.68 +0.5 3,852,013 - ABIE41_RS18710 0.68 -0.5 3,852,116 + ABIE41_RS18710 0.78 -0.6
Or see this region's nucleotide sequence