Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14775 and ABIE41_RS14780 are separated by 136 nucleotides ABIE41_RS14780 and ABIE41_RS14785 are separated by 76 nucleotides
ABIE41_RS14775: ABIE41_RS14775 - isovaleryl-CoA dehydrogenase, at 3,020,305 to 3,021,477
_RS14775
ABIE41_RS14780: ABIE41_RS14780 - CorA family divalent cation transporter, at 3,021,614 to 3,022,624
_RS14780
ABIE41_RS14785: ABIE41_RS14785 - GH25 family lysozyme, at 3,022,701 to 3,023,624
_RS14785
Position (kb)
3021
3022
3023 Strain fitness (log2 ratio)
-1
0
1
2 at 3020.663 kb on + strand, within ABIE41_RS14775 at 3020.664 kb on - strand, within ABIE41_RS14775 at 3020.664 kb on - strand, within ABIE41_RS14775 at 3020.664 kb on - strand, within ABIE41_RS14775 at 3020.733 kb on - strand, within ABIE41_RS14775 at 3020.733 kb on - strand, within ABIE41_RS14775 at 3021.126 kb on - strand, within ABIE41_RS14775 at 3021.126 kb on - strand, within ABIE41_RS14775 at 3021.294 kb on + strand, within ABIE41_RS14775 at 3021.294 kb on + strand, within ABIE41_RS14775 at 3021.295 kb on - strand, within ABIE41_RS14775 at 3021.295 kb on - strand, within ABIE41_RS14775 at 3021.531 kb on - strand at 3021.532 kb on + strand at 3021.533 kb on - strand at 3021.802 kb on - strand, within ABIE41_RS14780 at 3021.802 kb on - strand, within ABIE41_RS14780 at 3021.802 kb on - strand, within ABIE41_RS14780 at 3021.804 kb on - strand, within ABIE41_RS14780 at 3022.993 kb on + strand, within ABIE41_RS14785 at 3022.994 kb on - strand, within ABIE41_RS14785 at 3022.994 kb on - strand, within ABIE41_RS14785 at 3023.033 kb on - strand, within ABIE41_RS14785 at 3023.089 kb on + strand, within ABIE41_RS14785 at 3023.089 kb on + strand, within ABIE41_RS14785 at 3023.090 kb on - strand, within ABIE41_RS14785 at 3023.090 kb on - strand, within ABIE41_RS14785 at 3023.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 3,020,663 + ABIE41_RS14775 0.31 -0.4 3,020,664 - ABIE41_RS14775 0.31 -0.2 3,020,664 - ABIE41_RS14775 0.31 -1.6 3,020,664 - ABIE41_RS14775 0.31 +0.5 3,020,733 - ABIE41_RS14775 0.36 -0.4 3,020,733 - ABIE41_RS14775 0.36 -1.0 3,021,126 - ABIE41_RS14775 0.70 +0.3 3,021,126 - ABIE41_RS14775 0.70 -0.6 3,021,294 + ABIE41_RS14775 0.84 -0.1 3,021,294 + ABIE41_RS14775 0.84 -0.3 3,021,295 - ABIE41_RS14775 0.84 +1.9 3,021,295 - ABIE41_RS14775 0.84 -0.0 3,021,531 - -0.3 3,021,532 + -1.0 3,021,533 - -1.6 3,021,802 - ABIE41_RS14780 0.19 +2.1 3,021,802 - ABIE41_RS14780 0.19 -0.2 3,021,802 - ABIE41_RS14780 0.19 -0.0 3,021,804 - ABIE41_RS14780 0.19 +0.0 3,022,993 + ABIE41_RS14785 0.32 +0.9 3,022,994 - ABIE41_RS14785 0.32 +0.4 3,022,994 - ABIE41_RS14785 0.32 -1.0 3,023,033 - ABIE41_RS14785 0.36 -0.3 3,023,089 + ABIE41_RS14785 0.42 -0.1 3,023,089 + ABIE41_RS14785 0.42 +0.0 3,023,090 - ABIE41_RS14785 0.42 +1.7 3,023,090 - ABIE41_RS14785 0.42 +1.6 3,023,537 - -0.0
Or see this region's nucleotide sequence