Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS12020 and ABIE41_RS12025 are separated by 5 nucleotides ABIE41_RS12025 and ABIE41_RS12030 are separated by 7 nucleotides ABIE41_RS12030 and ABIE41_RS12035 are separated by 115 nucleotides ABIE41_RS12035 and ABIE41_RS12040 are separated by 97 nucleotides ABIE41_RS12040 and ABIE41_RS12045 are separated by 194 nucleotides
ABIE41_RS12020: ABIE41_RS12020 - LysE family translocator, at 2,455,463 to 2,456,074
_RS12020
ABIE41_RS12025: ABIE41_RS12025 - secondary thiamine-phosphate synthase enzyme YjbQ, at 2,456,080 to 2,456,502
_RS12025
ABIE41_RS12030: ABIE41_RS12030 - DUF3072 domain-containing protein, at 2,456,510 to 2,456,761
_RS12030
ABIE41_RS12035: ABIE41_RS12035 - HlyU family transcriptional regulator, at 2,456,877 to 2,457,164
_RS12035
ABIE41_RS12040: ABIE41_RS12040 - type 1 glutamine amidotransferase domain-containing protein, at 2,457,262 to 2,457,822
_RS12040
ABIE41_RS12045: ABIE41_RS12045 - MFS transporter, at 2,458,017 to 2,459,258
_RS12045
Position (kb)
2456
2457
2458 Strain fitness (log2 ratio)
-1
0
1
2 at 2455.946 kb on + strand, within ABIE41_RS12020 at 2455.946 kb on + strand, within ABIE41_RS12020 at 2455.947 kb on - strand, within ABIE41_RS12020 at 2456.208 kb on + strand, within ABIE41_RS12025 at 2456.208 kb on + strand, within ABIE41_RS12025 at 2456.208 kb on + strand, within ABIE41_RS12025 at 2456.208 kb on + strand, within ABIE41_RS12025 at 2456.208 kb on + strand, within ABIE41_RS12025 at 2456.208 kb on + strand, within ABIE41_RS12025 at 2456.208 kb on + strand, within ABIE41_RS12025 at 2456.317 kb on + strand, within ABIE41_RS12025 at 2456.317 kb on + strand, within ABIE41_RS12025 at 2456.318 kb on - strand, within ABIE41_RS12025 at 2456.318 kb on - strand, within ABIE41_RS12025 at 2456.439 kb on + strand, within ABIE41_RS12025 at 2456.439 kb on + strand, within ABIE41_RS12025 at 2456.440 kb on - strand, within ABIE41_RS12025 at 2456.443 kb on + strand, within ABIE41_RS12025 at 2456.443 kb on + strand, within ABIE41_RS12025 at 2456.443 kb on + strand, within ABIE41_RS12025 at 2456.443 kb on + strand, within ABIE41_RS12025 at 2456.443 kb on + strand, within ABIE41_RS12025 at 2456.443 kb on + strand, within ABIE41_RS12025 at 2456.443 kb on + strand, within ABIE41_RS12025 at 2456.443 kb on + strand, within ABIE41_RS12025 at 2456.444 kb on - strand, within ABIE41_RS12025 at 2456.444 kb on - strand, within ABIE41_RS12025 at 2456.444 kb on - strand, within ABIE41_RS12025 at 2456.444 kb on - strand, within ABIE41_RS12025 at 2456.622 kb on + strand, within ABIE41_RS12030 at 2456.622 kb on + strand, within ABIE41_RS12030 at 2456.622 kb on + strand, within ABIE41_RS12030 at 2456.622 kb on + strand, within ABIE41_RS12030 at 2456.622 kb on + strand, within ABIE41_RS12030 at 2456.622 kb on + strand, within ABIE41_RS12030 at 2456.623 kb on - strand, within ABIE41_RS12030 at 2456.623 kb on - strand, within ABIE41_RS12030 at 2456.623 kb on - strand, within ABIE41_RS12030 at 2456.986 kb on - strand, within ABIE41_RS12035 at 2457.475 kb on + strand, within ABIE41_RS12040 at 2457.475 kb on + strand, within ABIE41_RS12040 at 2457.475 kb on + strand, within ABIE41_RS12040 at 2457.475 kb on + strand, within ABIE41_RS12040 at 2457.476 kb on - strand, within ABIE41_RS12040 at 2457.476 kb on - strand, within ABIE41_RS12040 at 2457.652 kb on + strand, within ABIE41_RS12040 at 2457.652 kb on + strand, within ABIE41_RS12040 at 2457.652 kb on + strand, within ABIE41_RS12040 at 2457.653 kb on - strand, within ABIE41_RS12040 at 2457.653 kb on - strand, within ABIE41_RS12040 at 2457.653 kb on - strand, within ABIE41_RS12040 at 2457.968 kb on - strand at 2458.056 kb on + strand at 2458.056 kb on + strand at 2458.057 kb on - strand at 2458.057 kb on - strand at 2458.057 kb on - strand at 2458.057 kb on - strand at 2458.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 2,455,946 + ABIE41_RS12020 0.79 +0.5 2,455,946 + ABIE41_RS12020 0.79 +0.4 2,455,947 - ABIE41_RS12020 0.79 -0.4 2,456,208 + ABIE41_RS12025 0.30 -0.3 2,456,208 + ABIE41_RS12025 0.30 -0.6 2,456,208 + ABIE41_RS12025 0.30 +2.0 2,456,208 + ABIE41_RS12025 0.30 -0.8 2,456,208 + ABIE41_RS12025 0.30 -0.4 2,456,208 + ABIE41_RS12025 0.30 +0.6 2,456,208 + ABIE41_RS12025 0.30 -0.2 2,456,317 + ABIE41_RS12025 0.56 -0.8 2,456,317 + ABIE41_RS12025 0.56 -0.4 2,456,318 - ABIE41_RS12025 0.56 -1.7 2,456,318 - ABIE41_RS12025 0.56 -0.9 2,456,439 + ABIE41_RS12025 0.85 -1.2 2,456,439 + ABIE41_RS12025 0.85 -1.3 2,456,440 - ABIE41_RS12025 0.85 +0.2 2,456,443 + ABIE41_RS12025 0.86 +0.1 2,456,443 + ABIE41_RS12025 0.86 +1.2 2,456,443 + ABIE41_RS12025 0.86 +0.3 2,456,443 + ABIE41_RS12025 0.86 -1.0 2,456,443 + ABIE41_RS12025 0.86 +0.4 2,456,443 + ABIE41_RS12025 0.86 +0.0 2,456,443 + ABIE41_RS12025 0.86 +0.2 2,456,443 + ABIE41_RS12025 0.86 +0.6 2,456,444 - ABIE41_RS12025 0.86 -0.2 2,456,444 - ABIE41_RS12025 0.86 +0.0 2,456,444 - ABIE41_RS12025 0.86 -0.9 2,456,444 - ABIE41_RS12025 0.86 -0.7 2,456,622 + ABIE41_RS12030 0.44 +1.1 2,456,622 + ABIE41_RS12030 0.44 -0.0 2,456,622 + ABIE41_RS12030 0.44 +0.2 2,456,622 + ABIE41_RS12030 0.44 +1.8 2,456,622 + ABIE41_RS12030 0.44 +0.4 2,456,622 + ABIE41_RS12030 0.44 -0.1 2,456,623 - ABIE41_RS12030 0.45 +0.1 2,456,623 - ABIE41_RS12030 0.45 +0.1 2,456,623 - ABIE41_RS12030 0.45 +0.6 2,456,986 - ABIE41_RS12035 0.38 +0.7 2,457,475 + ABIE41_RS12040 0.38 +0.0 2,457,475 + ABIE41_RS12040 0.38 +0.3 2,457,475 + ABIE41_RS12040 0.38 +2.0 2,457,475 + ABIE41_RS12040 0.38 +0.4 2,457,476 - ABIE41_RS12040 0.38 +0.1 2,457,476 - ABIE41_RS12040 0.38 -0.1 2,457,652 + ABIE41_RS12040 0.70 -1.1 2,457,652 + ABIE41_RS12040 0.70 -0.1 2,457,652 + ABIE41_RS12040 0.70 -0.0 2,457,653 - ABIE41_RS12040 0.70 -0.5 2,457,653 - ABIE41_RS12040 0.70 +0.3 2,457,653 - ABIE41_RS12040 0.70 -1.0 2,457,968 - +0.3 2,458,056 + +0.0 2,458,056 + -0.5 2,458,057 - +0.6 2,458,057 - -1.1 2,458,057 - -0.3 2,458,057 - -0.7 2,458,057 - -0.1
Or see this region's nucleotide sequence