Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12035

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS12020 and ABIE41_RS12025 are separated by 5 nucleotidesABIE41_RS12025 and ABIE41_RS12030 are separated by 7 nucleotidesABIE41_RS12030 and ABIE41_RS12035 are separated by 115 nucleotidesABIE41_RS12035 and ABIE41_RS12040 are separated by 97 nucleotidesABIE41_RS12040 and ABIE41_RS12045 are separated by 194 nucleotides ABIE41_RS12020: ABIE41_RS12020 - LysE family translocator, at 2,455,463 to 2,456,074 _RS12020 ABIE41_RS12025: ABIE41_RS12025 - secondary thiamine-phosphate synthase enzyme YjbQ, at 2,456,080 to 2,456,502 _RS12025 ABIE41_RS12030: ABIE41_RS12030 - DUF3072 domain-containing protein, at 2,456,510 to 2,456,761 _RS12030 ABIE41_RS12035: ABIE41_RS12035 - HlyU family transcriptional regulator, at 2,456,877 to 2,457,164 _RS12035 ABIE41_RS12040: ABIE41_RS12040 - type 1 glutamine amidotransferase domain-containing protein, at 2,457,262 to 2,457,822 _RS12040 ABIE41_RS12045: ABIE41_RS12045 - MFS transporter, at 2,458,017 to 2,459,258 _RS12045 Position (kb) 2456 2457 2458Strain fitness (log2 ratio) -1 0 1 2at 2455.946 kb on + strand, within ABIE41_RS12020at 2455.946 kb on + strand, within ABIE41_RS12020at 2455.947 kb on - strand, within ABIE41_RS12020at 2456.208 kb on + strand, within ABIE41_RS12025at 2456.208 kb on + strand, within ABIE41_RS12025at 2456.208 kb on + strand, within ABIE41_RS12025at 2456.208 kb on + strand, within ABIE41_RS12025at 2456.208 kb on + strand, within ABIE41_RS12025at 2456.208 kb on + strand, within ABIE41_RS12025at 2456.208 kb on + strand, within ABIE41_RS12025at 2456.317 kb on + strand, within ABIE41_RS12025at 2456.317 kb on + strand, within ABIE41_RS12025at 2456.318 kb on - strand, within ABIE41_RS12025at 2456.318 kb on - strand, within ABIE41_RS12025at 2456.439 kb on + strand, within ABIE41_RS12025at 2456.439 kb on + strand, within ABIE41_RS12025at 2456.440 kb on - strand, within ABIE41_RS12025at 2456.443 kb on + strand, within ABIE41_RS12025at 2456.443 kb on + strand, within ABIE41_RS12025at 2456.443 kb on + strand, within ABIE41_RS12025at 2456.443 kb on + strand, within ABIE41_RS12025at 2456.443 kb on + strand, within ABIE41_RS12025at 2456.443 kb on + strand, within ABIE41_RS12025at 2456.443 kb on + strand, within ABIE41_RS12025at 2456.443 kb on + strand, within ABIE41_RS12025at 2456.444 kb on - strand, within ABIE41_RS12025at 2456.444 kb on - strand, within ABIE41_RS12025at 2456.444 kb on - strand, within ABIE41_RS12025at 2456.444 kb on - strand, within ABIE41_RS12025at 2456.622 kb on + strand, within ABIE41_RS12030at 2456.622 kb on + strand, within ABIE41_RS12030at 2456.622 kb on + strand, within ABIE41_RS12030at 2456.622 kb on + strand, within ABIE41_RS12030at 2456.622 kb on + strand, within ABIE41_RS12030at 2456.622 kb on + strand, within ABIE41_RS12030at 2456.623 kb on - strand, within ABIE41_RS12030at 2456.623 kb on - strand, within ABIE41_RS12030at 2456.623 kb on - strand, within ABIE41_RS12030at 2456.986 kb on - strand, within ABIE41_RS12035at 2457.475 kb on + strand, within ABIE41_RS12040at 2457.475 kb on + strand, within ABIE41_RS12040at 2457.475 kb on + strand, within ABIE41_RS12040at 2457.475 kb on + strand, within ABIE41_RS12040at 2457.476 kb on - strand, within ABIE41_RS12040at 2457.476 kb on - strand, within ABIE41_RS12040at 2457.652 kb on + strand, within ABIE41_RS12040at 2457.652 kb on + strand, within ABIE41_RS12040at 2457.652 kb on + strand, within ABIE41_RS12040at 2457.653 kb on - strand, within ABIE41_RS12040at 2457.653 kb on - strand, within ABIE41_RS12040at 2457.653 kb on - strand, within ABIE41_RS12040at 2457.968 kb on - strandat 2458.056 kb on + strandat 2458.056 kb on + strandat 2458.057 kb on - strandat 2458.057 kb on - strandat 2458.057 kb on - strandat 2458.057 kb on - strandat 2458.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,455,946 + ABIE41_RS12020 0.79 +0.5
2,455,946 + ABIE41_RS12020 0.79 +0.4
2,455,947 - ABIE41_RS12020 0.79 -0.4
2,456,208 + ABIE41_RS12025 0.30 -0.3
2,456,208 + ABIE41_RS12025 0.30 -0.6
2,456,208 + ABIE41_RS12025 0.30 +2.0
2,456,208 + ABIE41_RS12025 0.30 -0.8
2,456,208 + ABIE41_RS12025 0.30 -0.4
2,456,208 + ABIE41_RS12025 0.30 +0.6
2,456,208 + ABIE41_RS12025 0.30 -0.2
2,456,317 + ABIE41_RS12025 0.56 -0.8
2,456,317 + ABIE41_RS12025 0.56 -0.4
2,456,318 - ABIE41_RS12025 0.56 -1.7
2,456,318 - ABIE41_RS12025 0.56 -0.9
2,456,439 + ABIE41_RS12025 0.85 -1.2
2,456,439 + ABIE41_RS12025 0.85 -1.3
2,456,440 - ABIE41_RS12025 0.85 +0.2
2,456,443 + ABIE41_RS12025 0.86 +0.1
2,456,443 + ABIE41_RS12025 0.86 +1.2
2,456,443 + ABIE41_RS12025 0.86 +0.3
2,456,443 + ABIE41_RS12025 0.86 -1.0
2,456,443 + ABIE41_RS12025 0.86 +0.4
2,456,443 + ABIE41_RS12025 0.86 +0.0
2,456,443 + ABIE41_RS12025 0.86 +0.2
2,456,443 + ABIE41_RS12025 0.86 +0.6
2,456,444 - ABIE41_RS12025 0.86 -0.2
2,456,444 - ABIE41_RS12025 0.86 +0.0
2,456,444 - ABIE41_RS12025 0.86 -0.9
2,456,444 - ABIE41_RS12025 0.86 -0.7
2,456,622 + ABIE41_RS12030 0.44 +1.1
2,456,622 + ABIE41_RS12030 0.44 -0.0
2,456,622 + ABIE41_RS12030 0.44 +0.2
2,456,622 + ABIE41_RS12030 0.44 +1.8
2,456,622 + ABIE41_RS12030 0.44 +0.4
2,456,622 + ABIE41_RS12030 0.44 -0.1
2,456,623 - ABIE41_RS12030 0.45 +0.1
2,456,623 - ABIE41_RS12030 0.45 +0.1
2,456,623 - ABIE41_RS12030 0.45 +0.6
2,456,986 - ABIE41_RS12035 0.38 +0.7
2,457,475 + ABIE41_RS12040 0.38 +0.0
2,457,475 + ABIE41_RS12040 0.38 +0.3
2,457,475 + ABIE41_RS12040 0.38 +2.0
2,457,475 + ABIE41_RS12040 0.38 +0.4
2,457,476 - ABIE41_RS12040 0.38 +0.1
2,457,476 - ABIE41_RS12040 0.38 -0.1
2,457,652 + ABIE41_RS12040 0.70 -1.1
2,457,652 + ABIE41_RS12040 0.70 -0.1
2,457,652 + ABIE41_RS12040 0.70 -0.0
2,457,653 - ABIE41_RS12040 0.70 -0.5
2,457,653 - ABIE41_RS12040 0.70 +0.3
2,457,653 - ABIE41_RS12040 0.70 -1.0
2,457,968 - +0.3
2,458,056 + +0.0
2,458,056 + -0.5
2,458,057 - +0.6
2,458,057 - -1.1
2,458,057 - -0.3
2,458,057 - -0.7
2,458,057 - -0.1

Or see this region's nucleotide sequence