Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08090

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08085 and ABIE41_RS08090 are separated by 233 nucleotidesABIE41_RS08090 and ABIE41_RS08095 are separated by 37 nucleotides ABIE41_RS08085: ABIE41_RS08085 - ABC transporter ATP-binding protein, at 1,660,566 to 1,661,651 _RS08085 ABIE41_RS08090: ABIE41_RS08090 - LysR family transcriptional regulator, at 1,661,885 to 1,662,847 _RS08090 ABIE41_RS08095: ABIE41_RS08095 - putative Ig domain-containing protein, at 1,662,885 to 1,672,922 _RS08095 Position (kb) 1661 1662 1663Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1661.071 kb on + strand, within ABIE41_RS08085at 1661.071 kb on + strand, within ABIE41_RS08085at 1661.071 kb on + strand, within ABIE41_RS08085at 1661.071 kb on + strand, within ABIE41_RS08085at 1661.071 kb on + strand, within ABIE41_RS08085at 1661.071 kb on + strand, within ABIE41_RS08085at 1661.072 kb on - strand, within ABIE41_RS08085at 1661.072 kb on - strand, within ABIE41_RS08085at 1661.072 kb on - strand, within ABIE41_RS08085at 1661.072 kb on - strand, within ABIE41_RS08085at 1661.072 kb on - strand, within ABIE41_RS08085at 1661.072 kb on - strand, within ABIE41_RS08085at 1661.072 kb on - strand, within ABIE41_RS08085at 1661.072 kb on - strand, within ABIE41_RS08085at 1661.072 kb on - strand, within ABIE41_RS08085at 1661.308 kb on + strand, within ABIE41_RS08085at 1661.308 kb on + strand, within ABIE41_RS08085at 1661.308 kb on + strand, within ABIE41_RS08085at 1661.370 kb on - strand, within ABIE41_RS08085at 1661.386 kb on + strand, within ABIE41_RS08085at 1661.386 kb on + strand, within ABIE41_RS08085at 1661.386 kb on + strand, within ABIE41_RS08085at 1661.386 kb on + strand, within ABIE41_RS08085at 1661.387 kb on - strand, within ABIE41_RS08085at 1661.387 kb on - strand, within ABIE41_RS08085at 1661.387 kb on - strand, within ABIE41_RS08085at 1661.387 kb on - strand, within ABIE41_RS08085at 1661.387 kb on - strand, within ABIE41_RS08085at 1661.387 kb on - strand, within ABIE41_RS08085at 1661.387 kb on - strand, within ABIE41_RS08085at 1661.387 kb on - strand, within ABIE41_RS08085at 1661.599 kb on + strandat 1661.599 kb on + strandat 1661.600 kb on - strandat 1661.723 kb on - strandat 1661.723 kb on - strandat 1661.733 kb on + strandat 1661.734 kb on - strandat 1661.734 kb on - strandat 1661.734 kb on - strandat 1661.858 kb on + strandat 1661.874 kb on - strandat 1661.874 kb on - strandat 1661.884 kb on + strandat 1661.884 kb on + strandat 1662.324 kb on + strand, within ABIE41_RS08090at 1662.414 kb on - strand, within ABIE41_RS08090at 1662.504 kb on - strand, within ABIE41_RS08090at 1662.504 kb on - strand, within ABIE41_RS08090at 1662.561 kb on - strand, within ABIE41_RS08090at 1663.006 kb on + strandat 1663.006 kb on + strandat 1663.006 kb on + strandat 1663.007 kb on - strandat 1663.537 kb on + strandat 1663.537 kb on + strandat 1663.537 kb on + strandat 1663.537 kb on + strandat 1663.537 kb on + strandat 1663.537 kb on + strandat 1663.537 kb on + strandat 1663.538 kb on - strandat 1663.538 kb on - strandat 1663.538 kb on - strandat 1663.538 kb on - strandat 1663.538 kb on - strandat 1663.538 kb on - strandat 1663.538 kb on - strandat 1663.539 kb on + strandat 1663.540 kb on + strandat 1663.540 kb on + strandat 1663.540 kb on + strandat 1663.540 kb on + strandat 1663.540 kb on + strandat 1663.540 kb on + strandat 1663.540 kb on + strandat 1663.541 kb on - strandat 1663.541 kb on - strandat 1663.541 kb on - strandat 1663.541 kb on - strandat 1663.541 kb on - strandat 1663.541 kb on - strandat 1663.541 kb on - strandat 1663.541 kb on - strandat 1663.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,661,071 + ABIE41_RS08085 0.47 -0.3
1,661,071 + ABIE41_RS08085 0.47 +0.1
1,661,071 + ABIE41_RS08085 0.47 +0.5
1,661,071 + ABIE41_RS08085 0.47 +0.6
1,661,071 + ABIE41_RS08085 0.47 +0.5
1,661,071 + ABIE41_RS08085 0.47 -0.8
1,661,072 - ABIE41_RS08085 0.47 +0.5
1,661,072 - ABIE41_RS08085 0.47 +0.1
1,661,072 - ABIE41_RS08085 0.47 +1.2
1,661,072 - ABIE41_RS08085 0.47 +0.1
1,661,072 - ABIE41_RS08085 0.47 +0.2
1,661,072 - ABIE41_RS08085 0.47 -0.8
1,661,072 - ABIE41_RS08085 0.47 +0.6
1,661,072 - ABIE41_RS08085 0.47 +0.4
1,661,072 - ABIE41_RS08085 0.47 +0.1
1,661,308 + ABIE41_RS08085 0.68 -0.7
1,661,308 + ABIE41_RS08085 0.68 -0.5
1,661,308 + ABIE41_RS08085 0.68 +1.3
1,661,370 - ABIE41_RS08085 0.74 -2.6
1,661,386 + ABIE41_RS08085 0.76 -0.8
1,661,386 + ABIE41_RS08085 0.76 +4.4
1,661,386 + ABIE41_RS08085 0.76 +1.9
1,661,386 + ABIE41_RS08085 0.76 -0.5
1,661,387 - ABIE41_RS08085 0.76 +0.2
1,661,387 - ABIE41_RS08085 0.76 +0.5
1,661,387 - ABIE41_RS08085 0.76 -0.7
1,661,387 - ABIE41_RS08085 0.76 -0.1
1,661,387 - ABIE41_RS08085 0.76 -1.0
1,661,387 - ABIE41_RS08085 0.76 -1.2
1,661,387 - ABIE41_RS08085 0.76 -0.2
1,661,387 - ABIE41_RS08085 0.76 -0.0
1,661,599 + -0.0
1,661,599 + +0.0
1,661,600 - -0.4
1,661,723 - +0.5
1,661,723 - -1.6
1,661,733 + +0.3
1,661,734 - -2.3
1,661,734 - -0.5
1,661,734 - -0.7
1,661,858 + -0.6
1,661,874 - -0.4
1,661,874 - +0.5
1,661,884 + +0.2
1,661,884 + +1.0
1,662,324 + ABIE41_RS08090 0.46 -0.2
1,662,414 - ABIE41_RS08090 0.55 -1.6
1,662,504 - ABIE41_RS08090 0.64 +1.6
1,662,504 - ABIE41_RS08090 0.64 -0.0
1,662,561 - ABIE41_RS08090 0.70 -0.9
1,663,006 + +0.5
1,663,006 + +0.4
1,663,006 + -0.5
1,663,007 - -0.1
1,663,537 + -1.0
1,663,537 + -0.6
1,663,537 + -0.3
1,663,537 + -0.1
1,663,537 + -0.9
1,663,537 + -0.5
1,663,537 + +0.7
1,663,538 - -0.4
1,663,538 - -0.1
1,663,538 - -0.5
1,663,538 - -2.4
1,663,538 - -0.5
1,663,538 - +2.7
1,663,538 - +1.7
1,663,539 + +0.1
1,663,540 + +0.1
1,663,540 + -0.1
1,663,540 + +0.4
1,663,540 + +0.2
1,663,540 + +0.9
1,663,540 + +0.8
1,663,540 + -2.0
1,663,541 - +0.2
1,663,541 - -1.1
1,663,541 - +0.2
1,663,541 - -0.7
1,663,541 - +0.5
1,663,541 - +1.7
1,663,541 - -1.5
1,663,541 - +1.4
1,663,541 - +0.1

Or see this region's nucleotide sequence