Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07275 and ABIE41_RS07280 are separated by 73 nucleotides ABIE41_RS07280 and ABIE41_RS07285 are separated by 276 nucleotides ABIE41_RS07285 and ABIE41_RS07290 are separated by 123 nucleotides ABIE41_RS07290 and ABIE41_RS07295 overlap by 4 nucleotides
ABIE41_RS07275: ABIE41_RS07275 - esterase-like activity of phytase family protein, at 1,500,990 to 1,501,991
_RS07275
ABIE41_RS07280: ABIE41_RS07280 - 50S ribosomal protein L28, at 1,502,065 to 1,502,352
_RS07280
ABIE41_RS07285: ABIE41_RS07285 - DUF3108 domain-containing protein, at 1,502,629 to 1,503,450
_RS07285
ABIE41_RS07290: ABIE41_RS07290 - SMR family transporter, at 1,503,574 to 1,503,918
_RS07290
ABIE41_RS07295: ABIE41_RS07295 - pyridoxal phosphate-dependent aminotransferase, at 1,503,915 to 1,505,099
_RS07295
Position (kb)
1502
1503
1504 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1501.941 kb on - strand at 1501.941 kb on - strand at 1501.941 kb on - strand at 1502.717 kb on + strand, within ABIE41_RS07285 at 1502.717 kb on + strand, within ABIE41_RS07285 at 1502.717 kb on + strand, within ABIE41_RS07285 at 1502.717 kb on + strand, within ABIE41_RS07285 at 1502.718 kb on - strand, within ABIE41_RS07285 at 1502.718 kb on - strand, within ABIE41_RS07285 at 1502.718 kb on - strand, within ABIE41_RS07285 at 1502.797 kb on + strand, within ABIE41_RS07285 at 1502.798 kb on - strand, within ABIE41_RS07285 at 1502.798 kb on - strand, within ABIE41_RS07285 at 1503.154 kb on + strand, within ABIE41_RS07285 at 1503.155 kb on - strand, within ABIE41_RS07285 at 1503.205 kb on + strand, within ABIE41_RS07285 at 1503.205 kb on + strand, within ABIE41_RS07285 at 1503.206 kb on - strand, within ABIE41_RS07285 at 1503.206 kb on - strand, within ABIE41_RS07285 at 1503.207 kb on + strand, within ABIE41_RS07285 at 1503.238 kb on + strand, within ABIE41_RS07285 at 1503.238 kb on + strand, within ABIE41_RS07285 at 1503.238 kb on + strand, within ABIE41_RS07285 at 1503.238 kb on + strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285 at 1503.239 kb on - strand, within ABIE41_RS07285 at 1503.448 kb on + strand at 1503.448 kb on + strand at 1503.448 kb on + strand at 1503.448 kb on + strand at 1503.449 kb on - strand at 1503.449 kb on - strand at 1503.449 kb on - strand at 1503.728 kb on + strand, within ABIE41_RS07290 at 1503.728 kb on + strand, within ABIE41_RS07290 at 1503.729 kb on - strand, within ABIE41_RS07290 at 1503.729 kb on - strand, within ABIE41_RS07290 at 1503.773 kb on + strand, within ABIE41_RS07290 at 1503.773 kb on + strand, within ABIE41_RS07290 at 1503.774 kb on - strand, within ABIE41_RS07290 at 1503.774 kb on - strand, within ABIE41_RS07290 at 1503.774 kb on - strand, within ABIE41_RS07290 at 1503.890 kb on + strand at 1503.890 kb on + strand at 1503.891 kb on - strand at 1503.891 kb on - strand at 1503.891 kb on - strand at 1503.896 kb on + strand at 1503.896 kb on + strand at 1503.897 kb on - strand at 1503.897 kb on - strand at 1503.897 kb on - strand at 1503.897 kb on - strand at 1503.897 kb on - strand at 1503.897 kb on - strand at 1504.004 kb on + strand at 1504.004 kb on + strand at 1504.004 kb on + strand at 1504.004 kb on + strand at 1504.004 kb on + strand at 1504.004 kb on + strand at 1504.004 kb on + strand at 1504.004 kb on + strand at 1504.004 kb on + strand at 1504.005 kb on - strand at 1504.005 kb on - strand at 1504.006 kb on + strand at 1504.006 kb on + strand at 1504.006 kb on + strand at 1504.006 kb on + strand at 1504.006 kb on + strand at 1504.006 kb on - strand at 1504.007 kb on - strand at 1504.007 kb on - strand at 1504.007 kb on - strand at 1504.007 kb on - strand at 1504.007 kb on - strand at 1504.126 kb on + strand, within ABIE41_RS07295 at 1504.126 kb on + strand, within ABIE41_RS07295 at 1504.126 kb on + strand, within ABIE41_RS07295 at 1504.126 kb on + strand, within ABIE41_RS07295 at 1504.126 kb on + strand, within ABIE41_RS07295 at 1504.127 kb on - strand, within ABIE41_RS07295 at 1504.327 kb on + strand, within ABIE41_RS07295 at 1504.378 kb on + strand, within ABIE41_RS07295 at 1504.378 kb on + strand, within ABIE41_RS07295 at 1504.378 kb on + strand, within ABIE41_RS07295 at 1504.378 kb on + strand, within ABIE41_RS07295 at 1504.378 kb on + strand, within ABIE41_RS07295 at 1504.378 kb on + strand, within ABIE41_RS07295 at 1504.378 kb on + strand, within ABIE41_RS07295 at 1504.379 kb on - strand, within ABIE41_RS07295 at 1504.379 kb on - strand, within ABIE41_RS07295 at 1504.379 kb on - strand, within ABIE41_RS07295 at 1504.379 kb on - strand, within ABIE41_RS07295 at 1504.379 kb on - strand, within ABIE41_RS07295 at 1504.379 kb on - strand, within ABIE41_RS07295 at 1504.379 kb on - strand, within ABIE41_RS07295 at 1504.430 kb on - strand, within ABIE41_RS07295
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 1,501,941 - -0.2 1,501,941 - -0.4 1,501,941 - -0.2 1,502,717 + ABIE41_RS07285 0.11 +0.7 1,502,717 + ABIE41_RS07285 0.11 -0.4 1,502,717 + ABIE41_RS07285 0.11 -0.1 1,502,717 + ABIE41_RS07285 0.11 -2.1 1,502,718 - ABIE41_RS07285 0.11 -1.9 1,502,718 - ABIE41_RS07285 0.11 +1.4 1,502,718 - ABIE41_RS07285 0.11 -1.2 1,502,797 + ABIE41_RS07285 0.20 -0.2 1,502,798 - ABIE41_RS07285 0.21 +0.4 1,502,798 - ABIE41_RS07285 0.21 -0.1 1,503,154 + ABIE41_RS07285 0.64 -0.3 1,503,155 - ABIE41_RS07285 0.64 +0.3 1,503,205 + ABIE41_RS07285 0.70 +0.3 1,503,205 + ABIE41_RS07285 0.70 +1.8 1,503,206 - ABIE41_RS07285 0.70 +0.7 1,503,206 - ABIE41_RS07285 0.70 +0.1 1,503,207 + ABIE41_RS07285 0.70 -0.6 1,503,238 + ABIE41_RS07285 0.74 +4.1 1,503,238 + ABIE41_RS07285 0.74 -0.5 1,503,238 + ABIE41_RS07285 0.74 -0.8 1,503,238 + ABIE41_RS07285 0.74 -0.7 1,503,239 - ABIE41_RS07285 0.74 +0.5 1,503,239 - ABIE41_RS07285 0.74 -0.2 1,503,239 - ABIE41_RS07285 0.74 +0.7 1,503,239 - ABIE41_RS07285 0.74 +0.1 1,503,239 - ABIE41_RS07285 0.74 +0.3 1,503,239 - ABIE41_RS07285 0.74 -0.9 1,503,448 + -0.5 1,503,448 + -1.3 1,503,448 + -1.5 1,503,448 + -0.3 1,503,449 - -0.7 1,503,449 - +0.5 1,503,449 - -0.5 1,503,728 + ABIE41_RS07290 0.45 +1.2 1,503,728 + ABIE41_RS07290 0.45 +0.2 1,503,729 - ABIE41_RS07290 0.45 +3.1 1,503,729 - ABIE41_RS07290 0.45 -0.4 1,503,773 + ABIE41_RS07290 0.58 +0.6 1,503,773 + ABIE41_RS07290 0.58 -0.7 1,503,774 - ABIE41_RS07290 0.58 +2.1 1,503,774 - ABIE41_RS07290 0.58 -0.8 1,503,774 - ABIE41_RS07290 0.58 +0.9 1,503,890 + -1.1 1,503,890 + -1.0 1,503,891 - -0.2 1,503,891 - +0.5 1,503,891 - -0.4 1,503,896 + +0.2 1,503,896 + -0.3 1,503,897 - +0.3 1,503,897 - +0.2 1,503,897 - -0.2 1,503,897 - +1.6 1,503,897 - -0.7 1,503,897 - -0.4 1,504,004 + +0.3 1,504,004 + +0.0 1,504,004 + -0.2 1,504,004 + -0.5 1,504,004 + +0.8 1,504,004 + -1.8 1,504,004 + -0.0 1,504,004 + -0.9 1,504,004 + -0.9 1,504,005 - -2.7 1,504,005 - +1.1 1,504,006 + -0.4 1,504,006 + -0.4 1,504,006 + -0.1 1,504,006 + +0.1 1,504,006 + -0.1 1,504,006 - +0.3 1,504,007 - +0.2 1,504,007 - -1.5 1,504,007 - +0.5 1,504,007 - -0.8 1,504,007 - -2.0 1,504,126 + ABIE41_RS07295 0.18 +2.1 1,504,126 + ABIE41_RS07295 0.18 +0.4 1,504,126 + ABIE41_RS07295 0.18 -0.3 1,504,126 + ABIE41_RS07295 0.18 -0.4 1,504,126 + ABIE41_RS07295 0.18 -1.7 1,504,127 - ABIE41_RS07295 0.18 -0.7 1,504,327 + ABIE41_RS07295 0.35 +0.2 1,504,378 + ABIE41_RS07295 0.39 +0.3 1,504,378 + ABIE41_RS07295 0.39 +1.7 1,504,378 + ABIE41_RS07295 0.39 -0.9 1,504,378 + ABIE41_RS07295 0.39 -1.2 1,504,378 + ABIE41_RS07295 0.39 +0.2 1,504,378 + ABIE41_RS07295 0.39 -0.9 1,504,378 + ABIE41_RS07295 0.39 -0.1 1,504,379 - ABIE41_RS07295 0.39 -1.5 1,504,379 - ABIE41_RS07295 0.39 -0.2 1,504,379 - ABIE41_RS07295 0.39 -1.7 1,504,379 - ABIE41_RS07295 0.39 -0.2 1,504,379 - ABIE41_RS07295 0.39 -0.3 1,504,379 - ABIE41_RS07295 0.39 +0.9 1,504,379 - ABIE41_RS07295 0.39 -0.7 1,504,430 - ABIE41_RS07295 0.43 -0.6
Or see this region's nucleotide sequence