Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28855

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28850 and ABID97_RS28855 are separated by 33 nucleotidesABID97_RS28855 and ABID97_RS28860 are separated by 235 nucleotidesABID97_RS28860 and ABID97_RS28865 are separated by 10 nucleotides ABID97_RS28850: ABID97_RS28850 - chloride channel protein, at 686,203 to 687,960 _RS28850 ABID97_RS28855: ABID97_RS28855 - PAS domain-containing protein, at 687,994 to 690,981 _RS28855 ABID97_RS28860: ABID97_RS28860 - universal stress protein, at 691,217 to 691,651 _RS28860 ABID97_RS28865: ABID97_RS28865 - TerC family protein, at 691,662 to 692,372 _RS28865 Position (kb) 687 688 689 690 691Strain fitness (log2 ratio) -1 0 1at 687.065 kb on - strand, within ABID97_RS28850at 687.302 kb on + strand, within ABID97_RS28850at 687.302 kb on + strand, within ABID97_RS28850at 687.303 kb on - strand, within ABID97_RS28850at 687.303 kb on - strand, within ABID97_RS28850at 687.496 kb on + strand, within ABID97_RS28850at 687.607 kb on + strand, within ABID97_RS28850at 688.064 kb on + strandat 688.064 kb on + strandat 688.400 kb on + strand, within ABID97_RS28855at 688.400 kb on + strand, within ABID97_RS28855at 688.613 kb on + strand, within ABID97_RS28855at 688.613 kb on + strand, within ABID97_RS28855at 688.614 kb on - strand, within ABID97_RS28855at 688.634 kb on + strand, within ABID97_RS28855at 688.634 kb on + strand, within ABID97_RS28855at 688.635 kb on - strand, within ABID97_RS28855at 688.749 kb on + strand, within ABID97_RS28855at 688.750 kb on - strand, within ABID97_RS28855at 688.750 kb on - strand, within ABID97_RS28855at 688.750 kb on - strand, within ABID97_RS28855at 688.750 kb on - strand, within ABID97_RS28855at 688.793 kb on + strand, within ABID97_RS28855at 688.836 kb on - strand, within ABID97_RS28855at 688.943 kb on + strand, within ABID97_RS28855at 688.944 kb on - strand, within ABID97_RS28855at 688.944 kb on - strand, within ABID97_RS28855at 689.036 kb on + strand, within ABID97_RS28855at 689.036 kb on + strand, within ABID97_RS28855at 689.036 kb on + strand, within ABID97_RS28855at 689.036 kb on + strand, within ABID97_RS28855at 689.036 kb on + strand, within ABID97_RS28855at 689.037 kb on - strand, within ABID97_RS28855at 689.072 kb on + strand, within ABID97_RS28855at 689.072 kb on + strand, within ABID97_RS28855at 689.073 kb on - strand, within ABID97_RS28855at 689.073 kb on - strand, within ABID97_RS28855at 689.106 kb on - strand, within ABID97_RS28855at 689.208 kb on - strand, within ABID97_RS28855at 689.208 kb on - strand, within ABID97_RS28855at 689.321 kb on + strand, within ABID97_RS28855at 689.321 kb on + strand, within ABID97_RS28855at 689.321 kb on + strand, within ABID97_RS28855at 689.561 kb on + strand, within ABID97_RS28855at 689.561 kb on + strand, within ABID97_RS28855at 689.561 kb on + strand, within ABID97_RS28855at 689.562 kb on - strand, within ABID97_RS28855at 689.562 kb on - strand, within ABID97_RS28855at 689.562 kb on - strand, within ABID97_RS28855at 689.597 kb on + strand, within ABID97_RS28855at 689.597 kb on + strand, within ABID97_RS28855at 689.598 kb on - strand, within ABID97_RS28855at 689.921 kb on + strand, within ABID97_RS28855at 689.922 kb on - strand, within ABID97_RS28855at 689.922 kb on - strand, within ABID97_RS28855at 689.922 kb on - strand, within ABID97_RS28855at 689.922 kb on - strand, within ABID97_RS28855at 690.432 kb on - strand, within ABID97_RS28855at 690.635 kb on + strand, within ABID97_RS28855at 690.909 kb on - strandat 691.066 kb on + strandat 691.067 kb on - strandat 691.067 kb on - strandat 691.067 kb on - strandat 691.067 kb on - strandat 691.067 kb on - strandat 691.142 kb on - strandat 691.345 kb on - strand, within ABID97_RS28860at 691.345 kb on - strand, within ABID97_RS28860

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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687,065 - ABID97_RS28850 0.49 -0.2
687,302 + ABID97_RS28850 0.63 +0.1
687,302 + ABID97_RS28850 0.63 +1.5
687,303 - ABID97_RS28850 0.63 -0.3
687,303 - ABID97_RS28850 0.63 -0.4
687,496 + ABID97_RS28850 0.74 -0.3
687,607 + ABID97_RS28850 0.80 -0.3
688,064 + -1.1
688,064 + -0.2
688,400 + ABID97_RS28855 0.14 +0.3
688,400 + ABID97_RS28855 0.14 -0.5
688,613 + ABID97_RS28855 0.21 -0.0
688,613 + ABID97_RS28855 0.21 -0.2
688,614 - ABID97_RS28855 0.21 -0.1
688,634 + ABID97_RS28855 0.21 +0.3
688,634 + ABID97_RS28855 0.21 -0.7
688,635 - ABID97_RS28855 0.21 +0.0
688,749 + ABID97_RS28855 0.25 -0.7
688,750 - ABID97_RS28855 0.25 +0.8
688,750 - ABID97_RS28855 0.25 -0.2
688,750 - ABID97_RS28855 0.25 -0.4
688,750 - ABID97_RS28855 0.25 +0.4
688,793 + ABID97_RS28855 0.27 -0.3
688,836 - ABID97_RS28855 0.28 +1.0
688,943 + ABID97_RS28855 0.32 -1.7
688,944 - ABID97_RS28855 0.32 -0.4
688,944 - ABID97_RS28855 0.32 +0.1
689,036 + ABID97_RS28855 0.35 -0.0
689,036 + ABID97_RS28855 0.35 -0.4
689,036 + ABID97_RS28855 0.35 +0.3
689,036 + ABID97_RS28855 0.35 -0.1
689,036 + ABID97_RS28855 0.35 +0.2
689,037 - ABID97_RS28855 0.35 +1.1
689,072 + ABID97_RS28855 0.36 +0.4
689,072 + ABID97_RS28855 0.36 +0.1
689,073 - ABID97_RS28855 0.36 -0.1
689,073 - ABID97_RS28855 0.36 -0.4
689,106 - ABID97_RS28855 0.37 -0.2
689,208 - ABID97_RS28855 0.41 -0.1
689,208 - ABID97_RS28855 0.41 -0.3
689,321 + ABID97_RS28855 0.44 +0.2
689,321 + ABID97_RS28855 0.44 -0.3
689,321 + ABID97_RS28855 0.44 +0.1
689,561 + ABID97_RS28855 0.52 -0.3
689,561 + ABID97_RS28855 0.52 -0.5
689,561 + ABID97_RS28855 0.52 -0.3
689,562 - ABID97_RS28855 0.52 -0.2
689,562 - ABID97_RS28855 0.52 -0.2
689,562 - ABID97_RS28855 0.52 -0.2
689,597 + ABID97_RS28855 0.54 -0.1
689,597 + ABID97_RS28855 0.54 -0.4
689,598 - ABID97_RS28855 0.54 +0.1
689,921 + ABID97_RS28855 0.64 +0.1
689,922 - ABID97_RS28855 0.65 -0.1
689,922 - ABID97_RS28855 0.65 -0.1
689,922 - ABID97_RS28855 0.65 +0.5
689,922 - ABID97_RS28855 0.65 -1.0
690,432 - ABID97_RS28855 0.82 -0.5
690,635 + ABID97_RS28855 0.88 +0.3
690,909 - -0.0
691,066 + -0.2
691,067 - -0.2
691,067 - -0.4
691,067 - -0.6
691,067 - -0.0
691,067 - -0.5
691,142 - +0.1
691,345 - ABID97_RS28860 0.29 -1.4
691,345 - ABID97_RS28860 0.29 +0.1

Or see this region's nucleotide sequence