Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26870 and ABID97_RS26875 are separated by 98 nucleotides ABID97_RS26875 and ABID97_RS26880 are separated by 33 nucleotides ABID97_RS26880 and ABID97_RS26885 are separated by 56 nucleotides
ABID97_RS26870: ABID97_RS26870 - LysR substrate-binding domain-containing protein, at 297,701 to 298,626
_RS26870
ABID97_RS26875: ABID97_RS26875 - NUDIX hydrolase, at 298,725 to 299,201
_RS26875
ABID97_RS26880: ABID97_RS26880 - tripartite tricarboxylate transporter substrate binding protein, at 299,235 to 300,212
_RS26880
ABID97_RS26885: ABID97_RS26885 - tripartite tricarboxylate transporter substrate binding protein, at 300,269 to 301,240
_RS26885
Position (kb) 299
300
301 Strain fitness (log2 ratio) -1
0
1 at 298.637 kb on + strand at 298.637 kb on + strand at 298.638 kb on - strand at 298.995 kb on + strand, within ABID97_RS26875 at 298.996 kb on - strand, within ABID97_RS26875 at 299.049 kb on + strand, within ABID97_RS26875 at 299.236 kb on + strand at 299.236 kb on + strand at 299.237 kb on - strand at 299.364 kb on + strand, within ABID97_RS26880 at 299.815 kb on + strand, within ABID97_RS26880 at 299.945 kb on - strand, within ABID97_RS26880 at 300.243 kb on - strand at 300.777 kb on + strand, within ABID97_RS26885 at 300.778 kb on - strand, within ABID97_RS26885 at 300.930 kb on + strand, within ABID97_RS26885 at 300.930 kb on + strand, within ABID97_RS26885 at 300.931 kb on - strand, within ABID97_RS26885
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 298,637 + +0.2 298,637 + -0.1 298,638 - -0.8 298,995 + ABID97_RS26875 0.57 -0.1 298,996 - ABID97_RS26875 0.57 -0.4 299,049 + ABID97_RS26875 0.68 +0.1 299,236 + -0.4 299,236 + +0.2 299,237 - -0.3 299,364 + ABID97_RS26880 0.13 -0.6 299,815 + ABID97_RS26880 0.59 +1.2 299,945 - ABID97_RS26880 0.73 -1.5 300,243 - +1.0 300,777 + ABID97_RS26885 0.52 -0.2 300,778 - ABID97_RS26885 0.52 +0.6 300,930 + ABID97_RS26885 0.68 -0.2 300,930 + ABID97_RS26885 0.68 -0.3 300,931 - ABID97_RS26885 0.68 -0.5
Or see this region's nucleotide sequence