Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22340

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22335 and ABID97_RS22340 are separated by 215 nucleotidesABID97_RS22340 and ABID97_RS22345 are separated by 104 nucleotides ABID97_RS22335: ABID97_RS22335 - NAD(P)/FAD-dependent oxidoreductase, at 4,627,840 to 4,629,180 _RS22335 ABID97_RS22340: ABID97_RS22340 - NADP-dependent malic enzyme, at 4,629,396 to 4,631,699 _RS22340 ABID97_RS22345: ABID97_RS22345 - ABC transporter substrate-binding protein, at 4,631,804 to 4,632,838 _RS22345 Position (kb) 4629 4630 4631 4632Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4628.444 kb on + strand, within ABID97_RS22335at 4628.498 kb on + strand, within ABID97_RS22335at 4628.498 kb on + strand, within ABID97_RS22335at 4628.586 kb on - strand, within ABID97_RS22335at 4628.586 kb on - strand, within ABID97_RS22335at 4628.586 kb on - strand, within ABID97_RS22335at 4628.868 kb on - strand, within ABID97_RS22335at 4629.849 kb on + strand, within ABID97_RS22340at 4629.850 kb on - strand, within ABID97_RS22340at 4630.092 kb on + strand, within ABID97_RS22340at 4630.092 kb on + strand, within ABID97_RS22340at 4630.092 kb on + strand, within ABID97_RS22340at 4630.093 kb on - strand, within ABID97_RS22340at 4630.093 kb on - strand, within ABID97_RS22340at 4630.515 kb on + strand, within ABID97_RS22340at 4630.516 kb on - strand, within ABID97_RS22340at 4630.516 kb on - strand, within ABID97_RS22340at 4630.548 kb on + strand, within ABID97_RS22340at 4630.549 kb on - strand, within ABID97_RS22340at 4630.549 kb on - strand, within ABID97_RS22340at 4630.689 kb on + strand, within ABID97_RS22340at 4630.948 kb on - strand, within ABID97_RS22340at 4630.948 kb on - strand, within ABID97_RS22340at 4631.329 kb on - strand, within ABID97_RS22340at 4631.329 kb on - strand, within ABID97_RS22340at 4631.329 kb on - strand, within ABID97_RS22340at 4631.538 kb on + strandat 4631.538 kb on + strandat 4631.697 kb on + strandat 4631.963 kb on + strand, within ABID97_RS22345at 4631.964 kb on - strand, within ABID97_RS22345at 4632.141 kb on - strand, within ABID97_RS22345at 4632.232 kb on - strand, within ABID97_RS22345at 4632.434 kb on + strand, within ABID97_RS22345at 4632.443 kb on + strand, within ABID97_RS22345at 4632.458 kb on + strand, within ABID97_RS22345

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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4,628,444 + ABID97_RS22335 0.45 +1.2
4,628,498 + ABID97_RS22335 0.49 -0.0
4,628,498 + ABID97_RS22335 0.49 -0.5
4,628,586 - ABID97_RS22335 0.56 +0.1
4,628,586 - ABID97_RS22335 0.56 -0.4
4,628,586 - ABID97_RS22335 0.56 +2.0
4,628,868 - ABID97_RS22335 0.77 -1.5
4,629,849 + ABID97_RS22340 0.20 -0.1
4,629,850 - ABID97_RS22340 0.20 -3.7
4,630,092 + ABID97_RS22340 0.30 +0.3
4,630,092 + ABID97_RS22340 0.30 +0.1
4,630,092 + ABID97_RS22340 0.30 -1.2
4,630,093 - ABID97_RS22340 0.30 -0.6
4,630,093 - ABID97_RS22340 0.30 -0.4
4,630,515 + ABID97_RS22340 0.49 -0.8
4,630,516 - ABID97_RS22340 0.49 -0.7
4,630,516 - ABID97_RS22340 0.49 -0.2
4,630,548 + ABID97_RS22340 0.50 -0.1
4,630,549 - ABID97_RS22340 0.50 -0.8
4,630,549 - ABID97_RS22340 0.50 -1.0
4,630,689 + ABID97_RS22340 0.56 -0.4
4,630,948 - ABID97_RS22340 0.67 -0.5
4,630,948 - ABID97_RS22340 0.67 -0.3
4,631,329 - ABID97_RS22340 0.84 -0.3
4,631,329 - ABID97_RS22340 0.84 -1.0
4,631,329 - ABID97_RS22340 0.84 -1.1
4,631,538 + -0.3
4,631,538 + -0.4
4,631,697 + -0.9
4,631,963 + ABID97_RS22345 0.15 +2.6
4,631,964 - ABID97_RS22345 0.15 -0.3
4,632,141 - ABID97_RS22345 0.33 -0.6
4,632,232 - ABID97_RS22345 0.41 -0.4
4,632,434 + ABID97_RS22345 0.61 -0.2
4,632,443 + ABID97_RS22345 0.62 -0.2
4,632,458 + ABID97_RS22345 0.63 -0.3

Or see this region's nucleotide sequence