Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16810

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16800 and ABID97_RS16805 are separated by 15 nucleotidesABID97_RS16805 and ABID97_RS16810 are separated by 3 nucleotidesABID97_RS16810 and ABID97_RS16815 are separated by 101 nucleotides ABID97_RS16800: ABID97_RS16800 - AMP-binding protein, at 3,474,747 to 3,476,456 _RS16800 ABID97_RS16805: ABID97_RS16805 - hypothetical protein, at 3,476,472 to 3,477,116 _RS16805 ABID97_RS16810: ABID97_RS16810 - phosphopantetheine-binding protein, at 3,477,120 to 3,477,431 _RS16810 ABID97_RS16815: ABID97_RS16815 - helicase HerA-like domain-containing protein, at 3,477,533 to 3,479,041 _RS16815 Position (kb) 3477 3478Strain fitness (log2 ratio) -2 -1 0 1at 3476.284 kb on + strand, within ABID97_RS16800at 3476.285 kb on - strand, within ABID97_RS16800at 3476.665 kb on + strand, within ABID97_RS16805at 3476.665 kb on + strand, within ABID97_RS16805at 3476.666 kb on - strand, within ABID97_RS16805at 3476.666 kb on - strand, within ABID97_RS16805at 3476.701 kb on + strand, within ABID97_RS16805at 3476.702 kb on - strand, within ABID97_RS16805at 3476.734 kb on + strand, within ABID97_RS16805at 3476.735 kb on - strand, within ABID97_RS16805at 3476.866 kb on + strand, within ABID97_RS16805at 3476.866 kb on + strand, within ABID97_RS16805at 3476.867 kb on - strand, within ABID97_RS16805at 3476.867 kb on - strand, within ABID97_RS16805at 3476.867 kb on - strand, within ABID97_RS16805at 3476.867 kb on - strand, within ABID97_RS16805at 3476.867 kb on - strand, within ABID97_RS16805at 3476.867 kb on - strand, within ABID97_RS16805at 3476.867 kb on - strand, within ABID97_RS16805at 3477.070 kb on + strandat 3477.070 kb on + strandat 3477.070 kb on + strandat 3477.286 kb on + strand, within ABID97_RS16810at 3477.286 kb on + strand, within ABID97_RS16810at 3477.286 kb on + strand, within ABID97_RS16810at 3477.286 kb on + strand, within ABID97_RS16810at 3477.287 kb on - strand, within ABID97_RS16810at 3477.460 kb on + strandat 3477.479 kb on + strandat 3477.480 kb on - strandat 3477.481 kb on + strandat 3477.481 kb on + strandat 3477.481 kb on + strandat 3477.481 kb on + strandat 3477.481 kb on + strandat 3477.481 kb on + strandat 3477.482 kb on - strandat 3477.482 kb on - strandat 3477.482 kb on - strandat 3477.482 kb on - strandat 3477.498 kb on + strandat 3477.498 kb on + strandat 3478.232 kb on + strand, within ABID97_RS16815at 3478.233 kb on - strand, within ABID97_RS16815at 3478.421 kb on + strand, within ABID97_RS16815at 3478.422 kb on - strand, within ABID97_RS16815

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,476,284 + ABID97_RS16800 0.90 -0.1
3,476,285 - ABID97_RS16800 0.90 -0.1
3,476,665 + ABID97_RS16805 0.30 -1.4
3,476,665 + ABID97_RS16805 0.30 -0.6
3,476,666 - ABID97_RS16805 0.30 +0.8
3,476,666 - ABID97_RS16805 0.30 +0.1
3,476,701 + ABID97_RS16805 0.36 +0.6
3,476,702 - ABID97_RS16805 0.36 -0.2
3,476,734 + ABID97_RS16805 0.41 +0.0
3,476,735 - ABID97_RS16805 0.41 +0.0
3,476,866 + ABID97_RS16805 0.61 -1.8
3,476,866 + ABID97_RS16805 0.61 -0.2
3,476,867 - ABID97_RS16805 0.61 -0.4
3,476,867 - ABID97_RS16805 0.61 -0.7
3,476,867 - ABID97_RS16805 0.61 +1.0
3,476,867 - ABID97_RS16805 0.61 +0.3
3,476,867 - ABID97_RS16805 0.61 +0.4
3,476,867 - ABID97_RS16805 0.61 -0.2
3,476,867 - ABID97_RS16805 0.61 -1.0
3,477,070 + -0.2
3,477,070 + +1.0
3,477,070 + +0.3
3,477,286 + ABID97_RS16810 0.53 -0.8
3,477,286 + ABID97_RS16810 0.53 +1.0
3,477,286 + ABID97_RS16810 0.53 +0.5
3,477,286 + ABID97_RS16810 0.53 +0.6
3,477,287 - ABID97_RS16810 0.54 +0.2
3,477,460 + +0.4
3,477,479 + -0.8
3,477,480 - +0.6
3,477,481 + -0.2
3,477,481 + -0.2
3,477,481 + +0.5
3,477,481 + +0.2
3,477,481 + +0.1
3,477,481 + -0.5
3,477,482 - -0.5
3,477,482 - -0.4
3,477,482 - -0.6
3,477,482 - -0.3
3,477,498 + +0.1
3,477,498 + +0.4
3,478,232 + ABID97_RS16815 0.46 +0.2
3,478,233 - ABID97_RS16815 0.46 -0.2
3,478,421 + ABID97_RS16815 0.59 +0.0
3,478,422 - ABID97_RS16815 0.59 +0.5

Or see this region's nucleotide sequence