Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15875

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15870 and ABID97_RS15875 are separated by 20 nucleotidesABID97_RS15875 and ABID97_RS15880 overlap by 1 nucleotidesABID97_RS15880 and ABID97_RS15885 overlap by 4 nucleotides ABID97_RS15870: ABID97_RS15870 - MFS transporter, at 3,289,502 to 3,290,845 _RS15870 ABID97_RS15875: ABID97_RS15875 - paraquat-inducible protein A, at 3,290,866 to 3,291,498 _RS15875 ABID97_RS15880: ABID97_RS15880 - paraquat-inducible protein A, at 3,291,498 to 3,292,214 _RS15880 ABID97_RS15885: ABID97_RS15885 - MlaD family protein, at 3,292,211 to 3,293,854 _RS15885 Position (kb) 3290 3291 3292Strain fitness (log2 ratio) -1 0 1 2at 3290.204 kb on + strand, within ABID97_RS15870at 3290.204 kb on + strand, within ABID97_RS15870at 3290.204 kb on + strand, within ABID97_RS15870at 3290.204 kb on + strand, within ABID97_RS15870at 3290.204 kb on + strand, within ABID97_RS15870at 3290.204 kb on + strand, within ABID97_RS15870at 3290.205 kb on - strand, within ABID97_RS15870at 3290.205 kb on - strand, within ABID97_RS15870at 3290.324 kb on + strand, within ABID97_RS15870at 3290.324 kb on + strand, within ABID97_RS15870at 3290.357 kb on + strand, within ABID97_RS15870at 3290.358 kb on - strand, within ABID97_RS15870at 3290.847 kb on + strandat 3290.847 kb on + strandat 3290.852 kb on + strandat 3291.214 kb on + strand, within ABID97_RS15875at 3291.215 kb on - strand, within ABID97_RS15875at 3291.215 kb on - strand, within ABID97_RS15875at 3291.648 kb on + strand, within ABID97_RS15880at 3291.648 kb on + strand, within ABID97_RS15880at 3291.664 kb on - strand, within ABID97_RS15880at 3291.664 kb on - strand, within ABID97_RS15880at 3291.711 kb on + strand, within ABID97_RS15880at 3291.711 kb on + strand, within ABID97_RS15880at 3291.711 kb on + strand, within ABID97_RS15880at 3291.711 kb on + strand, within ABID97_RS15880at 3291.711 kb on + strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.712 kb on - strand, within ABID97_RS15880at 3291.769 kb on - strand, within ABID97_RS15880at 3291.795 kb on + strand, within ABID97_RS15880at 3291.877 kb on + strand, within ABID97_RS15880at 3291.877 kb on + strand, within ABID97_RS15880at 3291.946 kb on - strand, within ABID97_RS15880at 3292.442 kb on + strand, within ABID97_RS15885at 3292.442 kb on + strand, within ABID97_RS15885at 3292.443 kb on - strand, within ABID97_RS15885

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,290,204 + ABID97_RS15870 0.52 +1.3
3,290,204 + ABID97_RS15870 0.52 +0.3
3,290,204 + ABID97_RS15870 0.52 +0.1
3,290,204 + ABID97_RS15870 0.52 +0.0
3,290,204 + ABID97_RS15870 0.52 +1.8
3,290,204 + ABID97_RS15870 0.52 -0.1
3,290,205 - ABID97_RS15870 0.52 +0.1
3,290,205 - ABID97_RS15870 0.52 -0.9
3,290,324 + ABID97_RS15870 0.61 +0.4
3,290,324 + ABID97_RS15870 0.61 +0.0
3,290,357 + ABID97_RS15870 0.64 -0.3
3,290,358 - ABID97_RS15870 0.64 +0.9
3,290,847 + +0.4
3,290,847 + +0.2
3,290,852 + +0.1
3,291,214 + ABID97_RS15875 0.55 -0.1
3,291,215 - ABID97_RS15875 0.55 -0.2
3,291,215 - ABID97_RS15875 0.55 -0.2
3,291,648 + ABID97_RS15880 0.21 +0.1
3,291,648 + ABID97_RS15880 0.21 -0.4
3,291,664 - ABID97_RS15880 0.23 -1.7
3,291,664 - ABID97_RS15880 0.23 +0.0
3,291,711 + ABID97_RS15880 0.30 -0.5
3,291,711 + ABID97_RS15880 0.30 -0.3
3,291,711 + ABID97_RS15880 0.30 -0.3
3,291,711 + ABID97_RS15880 0.30 -0.8
3,291,711 + ABID97_RS15880 0.30 -0.0
3,291,712 - ABID97_RS15880 0.30 +1.4
3,291,712 - ABID97_RS15880 0.30 +0.0
3,291,712 - ABID97_RS15880 0.30 -0.2
3,291,712 - ABID97_RS15880 0.30 -0.2
3,291,712 - ABID97_RS15880 0.30 -0.1
3,291,712 - ABID97_RS15880 0.30 -0.1
3,291,769 - ABID97_RS15880 0.38 +0.7
3,291,795 + ABID97_RS15880 0.41 -0.7
3,291,877 + ABID97_RS15880 0.53 -0.3
3,291,877 + ABID97_RS15880 0.53 -0.6
3,291,946 - ABID97_RS15880 0.62 +0.4
3,292,442 + ABID97_RS15885 0.14 +0.7
3,292,442 + ABID97_RS15885 0.14 -1.1
3,292,443 - ABID97_RS15885 0.14 -0.1

Or see this region's nucleotide sequence