Strain Fitness in Escherichia coli BW25113 around b2929

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntepd and yggC are separated by 284 nucleotidesyggC and yggD overlap by 4 nucleotidesyggD and yggF are separated by 21 nucleotidesyggF and yggP overlap by 4 nucleotides b2927: epd - D-erythrose 4-phosphate dehydrogenase (NCBI), at 3,070,694 to 3,071,713 epd b2928: yggC - hypothetical protein (NCBI), at 3,071,998 to 3,072,711 yggC b2929: yggD - predicted DNA-binding transcriptional regulator (NCBI), at 3,072,708 to 3,073,217 yggD b2930: yggF - predicted hexoseP phosphatase (NCBI), at 3,073,239 to 3,074,204 yggF b4465: yggP - predicted dehydrogenase (NCBI), at 3,074,201 to 3,075,478 yggP Position (kb) 3072 3073 3074Strain fitness (log2 ratio) -1 0 1at 3071.717 kb on - strandat 3071.763 kb on - strandat 3071.763 kb on - strandat 3071.942 kb on - strandat 3071.946 kb on + strandat 3071.954 kb on - strandat 3072.064 kb on - strandat 3072.064 kb on - strandat 3072.088 kb on - strand, within yggCat 3072.160 kb on - strand, within yggCat 3072.240 kb on - strand, within yggCat 3072.240 kb on - strand, within yggCat 3072.340 kb on + strand, within yggCat 3072.340 kb on + strand, within yggCat 3072.367 kb on - strand, within yggCat 3072.434 kb on - strand, within yggCat 3072.495 kb on + strand, within yggCat 3072.495 kb on + strand, within yggCat 3072.551 kb on + strand, within yggCat 3072.551 kb on + strand, within yggCat 3072.578 kb on + strand, within yggCat 3072.612 kb on - strand, within yggCat 3072.671 kb on + strandat 3072.672 kb on - strandat 3072.695 kb on - strandat 3072.695 kb on - strandat 3072.827 kb on + strand, within yggDat 3072.856 kb on + strand, within yggDat 3072.939 kb on - strand, within yggDat 3072.969 kb on - strand, within yggDat 3073.062 kb on + strand, within yggDat 3073.062 kb on + strand, within yggDat 3073.174 kb on + strandat 3073.204 kb on - strandat 3073.204 kb on - strandat 3073.263 kb on - strandat 3073.272 kb on - strandat 3073.322 kb on + strandat 3073.328 kb on - strandat 3073.330 kb on - strandat 3073.414 kb on - strand, within yggFat 3073.518 kb on + strand, within yggFat 3073.518 kb on + strand, within yggFat 3073.714 kb on + strand, within yggFat 3073.729 kb on + strand, within yggFat 3073.729 kb on + strand, within yggFat 3073.922 kb on - strand, within yggFat 3073.922 kb on - strand, within yggFat 3074.056 kb on - strand, within yggFat 3074.081 kb on - strand, within yggFat 3074.204 kb on - strandat 3074.204 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,071,717 - +0.0
3,071,763 - -0.6
3,071,763 - +0.3
3,071,942 - +1.0
3,071,946 + -0.2
3,071,954 - +0.4
3,072,064 - -0.4
3,072,064 - +0.9
3,072,088 - yggC b2928 0.13 +0.4
3,072,160 - yggC b2928 0.23 +0.4
3,072,240 - yggC b2928 0.34 +0.1
3,072,240 - yggC b2928 0.34 +1.0
3,072,340 + yggC b2928 0.48 -0.7
3,072,340 + yggC b2928 0.48 -0.4
3,072,367 - yggC b2928 0.52 +0.1
3,072,434 - yggC b2928 0.61 -0.6
3,072,495 + yggC b2928 0.70 -0.0
3,072,495 + yggC b2928 0.70 -0.8
3,072,551 + yggC b2928 0.77 +1.2
3,072,551 + yggC b2928 0.77 -0.8
3,072,578 + yggC b2928 0.81 +0.9
3,072,612 - yggC b2928 0.86 +0.1
3,072,671 + -0.3
3,072,672 - +0.2
3,072,695 - -0.1
3,072,695 - -0.1
3,072,827 + yggD b2929 0.23 -1.6
3,072,856 + yggD b2929 0.29 +0.6
3,072,939 - yggD b2929 0.45 -0.7
3,072,969 - yggD b2929 0.51 -0.0
3,073,062 + yggD b2929 0.69 +0.2
3,073,062 + yggD b2929 0.69 +0.2
3,073,174 + -0.3
3,073,204 - +0.6
3,073,204 - -0.1
3,073,263 - -0.3
3,073,272 - +1.0
3,073,322 + +0.0
3,073,328 - +0.3
3,073,330 - -0.1
3,073,414 - yggF b2930 0.18 -0.4
3,073,518 + yggF b2930 0.29 -0.6
3,073,518 + yggF b2930 0.29 +0.3
3,073,714 + yggF b2930 0.49 +1.5
3,073,729 + yggF b2930 0.51 +0.4
3,073,729 + yggF b2930 0.51 -0.2
3,073,922 - yggF b2930 0.71 -0.5
3,073,922 - yggF b2930 0.71 +0.7
3,074,056 - yggF b2930 0.85 -0.3
3,074,081 - yggF b2930 0.87 -0.0
3,074,204 - -1.3
3,074,204 - +0.3

Or see this region's nucleotide sequence